miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9332 5' -60.2 NC_002512.2 + 109037 0.66 0.824819
Target:  5'- -aCGAGGACCgggggGGCUCGGGggacgacCGGaCCCg -3'
miRNA:   3'- ugGUUCCUGG-----UCGAGUCC-------GCCaGGGa -5'
9332 5' -60.2 NC_002512.2 + 110898 0.66 0.81746
Target:  5'- gGCgGAGG-CCAGCcgCAGGCaGUUCUg -3'
miRNA:   3'- -UGgUUCCuGGUCGa-GUCCGcCAGGGa -5'
9332 5' -60.2 NC_002512.2 + 192878 0.66 0.812485
Target:  5'- cCCGGGGACgCAuauaagcgccgucgcGCUCcgcGGCGGUCCa- -3'
miRNA:   3'- uGGUUCCUG-GU---------------CGAGu--CCGCCAGGga -5'
9332 5' -60.2 NC_002512.2 + 188767 0.66 0.809138
Target:  5'- uCCAAGGGCgguuccggcggCGGCUCcggccucGGCGGcCCCg -3'
miRNA:   3'- uGGUUCCUG-----------GUCGAGu------CCGCCaGGGa -5'
9332 5' -60.2 NC_002512.2 + 183955 0.66 0.809138
Target:  5'- uCCcGGGACgCGcGCUCGGGCGucGUCgCCUg -3'
miRNA:   3'- uGGuUCCUG-GU-CGAGUCCGC--CAG-GGA- -5'
9332 5' -60.2 NC_002512.2 + 212912 0.66 0.809138
Target:  5'- cGCCGggAGGAaCGGCaucuucgaUCGGGCGG-CCCg -3'
miRNA:   3'- -UGGU--UCCUgGUCG--------AGUCCGCCaGGGa -5'
9332 5' -60.2 NC_002512.2 + 211140 0.66 0.80067
Target:  5'- gGCCGAGGACCugGGCgucauccaGGGCGuGcugCCCg -3'
miRNA:   3'- -UGGUUCCUGG--UCGag------UCCGC-Ca--GGGa -5'
9332 5' -60.2 NC_002512.2 + 153335 0.66 0.80067
Target:  5'- uCCGcuGGGCCGGUcCGGGUcggcgGGUCCCg -3'
miRNA:   3'- uGGUu-CCUGGUCGaGUCCG-----CCAGGGa -5'
9332 5' -60.2 NC_002512.2 + 227185 0.66 0.783325
Target:  5'- aGCCGGGGG--AGCggCAGGCGcUCCCg -3'
miRNA:   3'- -UGGUUCCUggUCGa-GUCCGCcAGGGa -5'
9332 5' -60.2 NC_002512.2 + 109849 0.67 0.765484
Target:  5'- gUCGGGGACCGGCguggcGGCGGUggggaCCUa -3'
miRNA:   3'- uGGUUCCUGGUCGagu--CCGCCAg----GGA- -5'
9332 5' -60.2 NC_002512.2 + 157046 0.67 0.765484
Target:  5'- -gCGAGGACCccGGCaaggCGGGC-GUCCCg -3'
miRNA:   3'- ugGUUCCUGG--UCGa---GUCCGcCAGGGa -5'
9332 5' -60.2 NC_002512.2 + 217510 0.67 0.728572
Target:  5'- cCCGAaGGCgAGCUCGGGgGGUCgCg -3'
miRNA:   3'- uGGUUcCUGgUCGAGUCCgCCAGgGa -5'
9332 5' -60.2 NC_002512.2 + 157078 0.67 0.728572
Target:  5'- uCCGGGGucGCCGGCgccCAcGGCGGgCCCg -3'
miRNA:   3'- uGGUUCC--UGGUCGa--GU-CCGCCaGGGa -5'
9332 5' -60.2 NC_002512.2 + 95637 0.68 0.719133
Target:  5'- gGCCAGGGGgCGGCUC-GGCcGcCCCc -3'
miRNA:   3'- -UGGUUCCUgGUCGAGuCCGcCaGGGa -5'
9332 5' -60.2 NC_002512.2 + 103464 0.68 0.700061
Target:  5'- uCCGAGGACgCGGCUCGggucucggcGGCGG-CCg- -3'
miRNA:   3'- uGGUUCCUG-GUCGAGU---------CCGCCaGGga -5'
9332 5' -60.2 NC_002512.2 + 116195 0.68 0.680781
Target:  5'- cGCUgcGGGCCAGg-CAGGCGGUCg-- -3'
miRNA:   3'- -UGGuuCCUGGUCgaGUCCGCCAGgga -5'
9332 5' -60.2 NC_002512.2 + 184579 0.68 0.680781
Target:  5'- cCCGcGGGCCGGCagGgcGGCGGUCCg- -3'
miRNA:   3'- uGGUuCCUGGUCGagU--CCGCCAGGga -5'
9332 5' -60.2 NC_002512.2 + 220318 0.68 0.680781
Target:  5'- gGCCGGGGGCCgGGCUCcGGGgGG-CCg- -3'
miRNA:   3'- -UGGUUCCUGG-UCGAG-UCCgCCaGGga -5'
9332 5' -60.2 NC_002512.2 + 194633 0.69 0.641842
Target:  5'- cGCgGGGGACCugcccGUccucuucuccgaUCGGGCGGUCCUg -3'
miRNA:   3'- -UGgUUCCUGGu----CG------------AGUCCGCCAGGGa -5'
9332 5' -60.2 NC_002512.2 + 36211 0.69 0.632072
Target:  5'- uCCGAGGuCCGaCUCGGaGaCGGUCCCg -3'
miRNA:   3'- uGGUUCCuGGUcGAGUC-C-GCCAGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.