miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9333 3' -58.2 NC_002512.2 + 103986 0.66 0.902264
Target:  5'- --aGCUGUCGCGcacCCUggacGCGGUCCGGUu -3'
miRNA:   3'- cagCGGCAGUGCc--GGA----UGUCAGGCUA- -5'
9333 3' -58.2 NC_002512.2 + 157735 0.66 0.896065
Target:  5'- aGUCGgCGUCcaucaaGGCCUGCAagauGUCCGu- -3'
miRNA:   3'- -CAGCgGCAGug----CCGGAUGU----CAGGCua -5'
9333 3' -58.2 NC_002512.2 + 92574 0.66 0.896065
Target:  5'- -gCGCCGacgcCGCGGCCgggaggggcgGCGGUCCcGAg -3'
miRNA:   3'- caGCGGCa---GUGCCGGa---------UGUCAGG-CUa -5'
9333 3' -58.2 NC_002512.2 + 183978 0.66 0.889651
Target:  5'- cGUCGCCuGUCGgGGCggACAgcuccccgucGUCCGGUu -3'
miRNA:   3'- -CAGCGG-CAGUgCCGgaUGU----------CAGGCUA- -5'
9333 3' -58.2 NC_002512.2 + 195046 0.66 0.889651
Target:  5'- --aGCCGcCGCGGCCcGCGggcgggagggucGUCCGGUc -3'
miRNA:   3'- cagCGGCaGUGCCGGaUGU------------CAGGCUA- -5'
9333 3' -58.2 NC_002512.2 + 103428 0.66 0.883027
Target:  5'- -aCGCCGUCgaACGcGUCguccCGGUCCGAg -3'
miRNA:   3'- caGCGGCAG--UGC-CGGau--GUCAGGCUa -5'
9333 3' -58.2 NC_002512.2 + 158862 0.66 0.876197
Target:  5'- cGUCGUCGUCGacCGGCCggcgGCGGcCCc-- -3'
miRNA:   3'- -CAGCGGCAGU--GCCGGa---UGUCaGGcua -5'
9333 3' -58.2 NC_002512.2 + 191415 0.66 0.876197
Target:  5'- -gCGCCGUgGCGGCCcgggcgggACAGUCa--- -3'
miRNA:   3'- caGCGGCAgUGCCGGa-------UGUCAGgcua -5'
9333 3' -58.2 NC_002512.2 + 2415 0.66 0.876197
Target:  5'- uGUCGCCGaCAgauuuucGCCUcCAGUCCGAa -3'
miRNA:   3'- -CAGCGGCaGUgc-----CGGAuGUCAGGCUa -5'
9333 3' -58.2 NC_002512.2 + 108094 0.67 0.861934
Target:  5'- cGUCGUCGUCuuCGGCgUccccgccucgGCGGUCCGc- -3'
miRNA:   3'- -CAGCGGCAGu-GCCGgA----------UGUCAGGCua -5'
9333 3' -58.2 NC_002512.2 + 222584 0.67 0.861934
Target:  5'- -cCGCCGUCGCGGaggagGCcuGUCCGGc -3'
miRNA:   3'- caGCGGCAGUGCCgga--UGu-CAGGCUa -5'
9333 3' -58.2 NC_002512.2 + 189238 0.67 0.839111
Target:  5'- cGUCGCCGUCGCGGaCgucACcGUCgGGg -3'
miRNA:   3'- -CAGCGGCAGUGCCgGa--UGuCAGgCUa -5'
9333 3' -58.2 NC_002512.2 + 216393 0.67 0.831146
Target:  5'- -cCGCCGUCuccguguuguuCGGCCgcaGCAgGUCCGGg -3'
miRNA:   3'- caGCGGCAGu----------GCCGGa--UGU-CAGGCUa -5'
9333 3' -58.2 NC_002512.2 + 178967 0.67 0.831146
Target:  5'- -aCGCCGcgGCGGCCcggaAGUCCGAc -3'
miRNA:   3'- caGCGGCagUGCCGGaug-UCAGGCUa -5'
9333 3' -58.2 NC_002512.2 + 97441 0.67 0.831146
Target:  5'- -gCGCUGUCGCuGGCgCUGgGGUUCGGa -3'
miRNA:   3'- caGCGGCAGUG-CCG-GAUgUCAGGCUa -5'
9333 3' -58.2 NC_002512.2 + 123673 0.68 0.823013
Target:  5'- -gCGCCGcCAUGGCC-GCGGaCCGGa -3'
miRNA:   3'- caGCGGCaGUGCCGGaUGUCaGGCUa -5'
9333 3' -58.2 NC_002512.2 + 39970 0.68 0.809668
Target:  5'- aUCGUCGcCACGGUuccagcgacagcgauCUugGGUCCGAc -3'
miRNA:   3'- cAGCGGCaGUGCCG---------------GAugUCAGGCUa -5'
9333 3' -58.2 NC_002512.2 + 122610 0.68 0.806271
Target:  5'- uUCGUC-UCgGCGGCCU-CGGUCCGGg -3'
miRNA:   3'- cAGCGGcAG-UGCCGGAuGUCAGGCUa -5'
9333 3' -58.2 NC_002512.2 + 184977 0.69 0.7747
Target:  5'- -cCGCCG-CGCGGCCgucgacguggagcgcUGCGGcCCGGUg -3'
miRNA:   3'- caGCGGCaGUGCCGG---------------AUGUCaGGCUA- -5'
9333 3' -58.2 NC_002512.2 + 222534 0.69 0.771091
Target:  5'- -cCGCCGUCGCGGUgggccgggCUACGGcgacCCGAc -3'
miRNA:   3'- caGCGGCAGUGCCG--------GAUGUCa---GGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.