Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9333 | 3' | -58.2 | NC_002512.2 | + | 103986 | 0.66 | 0.902264 |
Target: 5'- --aGCUGUCGCGcacCCUggacGCGGUCCGGUu -3' miRNA: 3'- cagCGGCAGUGCc--GGA----UGUCAGGCUA- -5' |
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9333 | 3' | -58.2 | NC_002512.2 | + | 157735 | 0.66 | 0.896065 |
Target: 5'- aGUCGgCGUCcaucaaGGCCUGCAagauGUCCGu- -3' miRNA: 3'- -CAGCgGCAGug----CCGGAUGU----CAGGCua -5' |
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9333 | 3' | -58.2 | NC_002512.2 | + | 92574 | 0.66 | 0.896065 |
Target: 5'- -gCGCCGacgcCGCGGCCgggaggggcgGCGGUCCcGAg -3' miRNA: 3'- caGCGGCa---GUGCCGGa---------UGUCAGG-CUa -5' |
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9333 | 3' | -58.2 | NC_002512.2 | + | 183978 | 0.66 | 0.889651 |
Target: 5'- cGUCGCCuGUCGgGGCggACAgcuccccgucGUCCGGUu -3' miRNA: 3'- -CAGCGG-CAGUgCCGgaUGU----------CAGGCUA- -5' |
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9333 | 3' | -58.2 | NC_002512.2 | + | 195046 | 0.66 | 0.889651 |
Target: 5'- --aGCCGcCGCGGCCcGCGggcgggagggucGUCCGGUc -3' miRNA: 3'- cagCGGCaGUGCCGGaUGU------------CAGGCUA- -5' |
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9333 | 3' | -58.2 | NC_002512.2 | + | 103428 | 0.66 | 0.883027 |
Target: 5'- -aCGCCGUCgaACGcGUCguccCGGUCCGAg -3' miRNA: 3'- caGCGGCAG--UGC-CGGau--GUCAGGCUa -5' |
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9333 | 3' | -58.2 | NC_002512.2 | + | 158862 | 0.66 | 0.876197 |
Target: 5'- cGUCGUCGUCGacCGGCCggcgGCGGcCCc-- -3' miRNA: 3'- -CAGCGGCAGU--GCCGGa---UGUCaGGcua -5' |
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9333 | 3' | -58.2 | NC_002512.2 | + | 191415 | 0.66 | 0.876197 |
Target: 5'- -gCGCCGUgGCGGCCcgggcgggACAGUCa--- -3' miRNA: 3'- caGCGGCAgUGCCGGa-------UGUCAGgcua -5' |
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9333 | 3' | -58.2 | NC_002512.2 | + | 2415 | 0.66 | 0.876197 |
Target: 5'- uGUCGCCGaCAgauuuucGCCUcCAGUCCGAa -3' miRNA: 3'- -CAGCGGCaGUgc-----CGGAuGUCAGGCUa -5' |
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9333 | 3' | -58.2 | NC_002512.2 | + | 108094 | 0.67 | 0.861934 |
Target: 5'- cGUCGUCGUCuuCGGCgUccccgccucgGCGGUCCGc- -3' miRNA: 3'- -CAGCGGCAGu-GCCGgA----------UGUCAGGCua -5' |
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9333 | 3' | -58.2 | NC_002512.2 | + | 222584 | 0.67 | 0.861934 |
Target: 5'- -cCGCCGUCGCGGaggagGCcuGUCCGGc -3' miRNA: 3'- caGCGGCAGUGCCgga--UGu-CAGGCUa -5' |
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9333 | 3' | -58.2 | NC_002512.2 | + | 189238 | 0.67 | 0.839111 |
Target: 5'- cGUCGCCGUCGCGGaCgucACcGUCgGGg -3' miRNA: 3'- -CAGCGGCAGUGCCgGa--UGuCAGgCUa -5' |
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9333 | 3' | -58.2 | NC_002512.2 | + | 216393 | 0.67 | 0.831146 |
Target: 5'- -cCGCCGUCuccguguuguuCGGCCgcaGCAgGUCCGGg -3' miRNA: 3'- caGCGGCAGu----------GCCGGa--UGU-CAGGCUa -5' |
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9333 | 3' | -58.2 | NC_002512.2 | + | 178967 | 0.67 | 0.831146 |
Target: 5'- -aCGCCGcgGCGGCCcggaAGUCCGAc -3' miRNA: 3'- caGCGGCagUGCCGGaug-UCAGGCUa -5' |
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9333 | 3' | -58.2 | NC_002512.2 | + | 97441 | 0.67 | 0.831146 |
Target: 5'- -gCGCUGUCGCuGGCgCUGgGGUUCGGa -3' miRNA: 3'- caGCGGCAGUG-CCG-GAUgUCAGGCUa -5' |
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9333 | 3' | -58.2 | NC_002512.2 | + | 123673 | 0.68 | 0.823013 |
Target: 5'- -gCGCCGcCAUGGCC-GCGGaCCGGa -3' miRNA: 3'- caGCGGCaGUGCCGGaUGUCaGGCUa -5' |
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9333 | 3' | -58.2 | NC_002512.2 | + | 39970 | 0.68 | 0.809668 |
Target: 5'- aUCGUCGcCACGGUuccagcgacagcgauCUugGGUCCGAc -3' miRNA: 3'- cAGCGGCaGUGCCG---------------GAugUCAGGCUa -5' |
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9333 | 3' | -58.2 | NC_002512.2 | + | 122610 | 0.68 | 0.806271 |
Target: 5'- uUCGUC-UCgGCGGCCU-CGGUCCGGg -3' miRNA: 3'- cAGCGGcAG-UGCCGGAuGUCAGGCUa -5' |
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9333 | 3' | -58.2 | NC_002512.2 | + | 184977 | 0.69 | 0.7747 |
Target: 5'- -cCGCCG-CGCGGCCgucgacguggagcgcUGCGGcCCGGUg -3' miRNA: 3'- caGCGGCaGUGCCGG---------------AUGUCaGGCUA- -5' |
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9333 | 3' | -58.2 | NC_002512.2 | + | 222534 | 0.69 | 0.771091 |
Target: 5'- -cCGCCGUCGCGGUgggccgggCUACGGcgacCCGAc -3' miRNA: 3'- caGCGGCAGUGCCG--------GAUGUCa---GGCUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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