miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9333 5' -58.4 NC_002512.2 + 193956 0.66 0.91335
Target:  5'- cGuCUGgCGCGAgaGGCCGCCGgcgagcucCUGACc -3'
miRNA:   3'- cCuGACgGCGCU--CCGGCGGU--------GAUUGc -5'
9333 5' -58.4 NC_002512.2 + 145085 0.66 0.91335
Target:  5'- cGACgaguuCCGCGAGGCguCGCgGCUGcCGg -3'
miRNA:   3'- cCUGac---GGCGCUCCG--GCGgUGAUuGC- -5'
9333 5' -58.4 NC_002512.2 + 222638 0.66 0.91335
Target:  5'- cGGACgccgcuccGCCGCGAcGGCCggccggGCCGaggGGCGc -3'
miRNA:   3'- -CCUGa-------CGGCGCU-CCGG------CGGUga-UUGC- -5'
9333 5' -58.4 NC_002512.2 + 4642 0.66 0.91335
Target:  5'- uGGACgGUgGUGGGGaUCGC-GCUAACGg -3'
miRNA:   3'- -CCUGaCGgCGCUCC-GGCGgUGAUUGC- -5'
9333 5' -58.4 NC_002512.2 + 135121 0.66 0.911656
Target:  5'- cGGAC-GgCGCGAcgcuccgagggccgGGCCGCC-CUggUGa -3'
miRNA:   3'- -CCUGaCgGCGCU--------------CCGGCGGuGAuuGC- -5'
9333 5' -58.4 NC_002512.2 + 96508 0.66 0.907629
Target:  5'- cGGGCgaccGCCG-GAGGgaGCCGCgccGGCGg -3'
miRNA:   3'- -CCUGa---CGGCgCUCCggCGGUGa--UUGC- -5'
9333 5' -58.4 NC_002512.2 + 92131 0.66 0.907629
Target:  5'- cGGACacGCUGCGGGcGCUGCgGCgcguGCa -3'
miRNA:   3'- -CCUGa-CGGCGCUC-CGGCGgUGau--UGc -5'
9333 5' -58.4 NC_002512.2 + 110501 0.66 0.907629
Target:  5'- cGGccCUGCaGCaGGGCCGCCGCgu-CGu -3'
miRNA:   3'- -CCu-GACGgCGcUCCGGCGGUGauuGC- -5'
9333 5' -58.4 NC_002512.2 + 127380 0.66 0.907629
Target:  5'- cGACgGCCGCGAcucCCGCgGCgggAACGa -3'
miRNA:   3'- cCUGaCGGCGCUcc-GGCGgUGa--UUGC- -5'
9333 5' -58.4 NC_002512.2 + 165495 0.66 0.907629
Target:  5'- uGGCUGCgCGUGGGGCgcuucucccggCGCUGC-AACGg -3'
miRNA:   3'- cCUGACG-GCGCUCCG-----------GCGGUGaUUGC- -5'
9333 5' -58.4 NC_002512.2 + 74627 0.66 0.907629
Target:  5'- cGGCUcCCGCGAGccgucgacGCCGCgACgGGCGg -3'
miRNA:   3'- cCUGAcGGCGCUC--------CGGCGgUGaUUGC- -5'
9333 5' -58.4 NC_002512.2 + 201327 0.66 0.907629
Target:  5'- cGuCUGCCGCGAcgucagcguGGCCGaCAUcgGGCGg -3'
miRNA:   3'- cCuGACGGCGCU---------CCGGCgGUGa-UUGC- -5'
9333 5' -58.4 NC_002512.2 + 129533 0.66 0.907045
Target:  5'- aGGACgacgccgUGCUGCGuGGCCGgCGCccGCc -3'
miRNA:   3'- -CCUG-------ACGGCGCuCCGGCgGUGauUGc -5'
9333 5' -58.4 NC_002512.2 + 191020 0.66 0.901695
Target:  5'- cGGACcgaggUGCCuGCGAGGCggggCGCgGCgcACGu -3'
miRNA:   3'- -CCUG-----ACGG-CGCUCCG----GCGgUGauUGC- -5'
9333 5' -58.4 NC_002512.2 + 219388 0.66 0.901695
Target:  5'- uGGGCUGCCuccGCuGGucGGcCCGCCGC-GACGc -3'
miRNA:   3'- -CCUGACGG---CG-CU--CC-GGCGGUGaUUGC- -5'
9333 5' -58.4 NC_002512.2 + 99888 0.66 0.901695
Target:  5'- cGGACacggGCaCGCGGcGCCGCCggcGCUcccGGCGg -3'
miRNA:   3'- -CCUGa---CG-GCGCUcCGGCGG---UGA---UUGC- -5'
9333 5' -58.4 NC_002512.2 + 193542 0.66 0.901695
Target:  5'- cGGAgU-CCGCGGGGUCgGgCGCUGugGu -3'
miRNA:   3'- -CCUgAcGGCGCUCCGG-CgGUGAUugC- -5'
9333 5' -58.4 NC_002512.2 + 222428 0.66 0.899874
Target:  5'- cGGCaGCCGCGccgcggcuucccccGGGCCGCgGCcAACc -3'
miRNA:   3'- cCUGaCGGCGC--------------UCCGGCGgUGaUUGc -5'
9333 5' -58.4 NC_002512.2 + 147837 0.66 0.89555
Target:  5'- cGACUccucccGCCGCGA--CCGCCGCcGGCGc -3'
miRNA:   3'- cCUGA------CGGCGCUccGGCGGUGaUUGC- -5'
9333 5' -58.4 NC_002512.2 + 133483 0.66 0.89555
Target:  5'- aGGCUcgGUC-CGAGGCCGCCGgUGAg- -3'
miRNA:   3'- cCUGA--CGGcGCUCCGGCGGUgAUUgc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.