Results 1 - 20 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9333 | 5' | -58.4 | NC_002512.2 | + | 145085 | 0.66 | 0.91335 |
Target: 5'- cGACgaguuCCGCGAGGCguCGCgGCUGcCGg -3' miRNA: 3'- cCUGac---GGCGCUCCG--GCGgUGAUuGC- -5' |
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9333 | 5' | -58.4 | NC_002512.2 | + | 222638 | 0.66 | 0.91335 |
Target: 5'- cGGACgccgcuccGCCGCGAcGGCCggccggGCCGaggGGCGc -3' miRNA: 3'- -CCUGa-------CGGCGCU-CCGG------CGGUga-UUGC- -5' |
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9333 | 5' | -58.4 | NC_002512.2 | + | 4642 | 0.66 | 0.91335 |
Target: 5'- uGGACgGUgGUGGGGaUCGC-GCUAACGg -3' miRNA: 3'- -CCUGaCGgCGCUCC-GGCGgUGAUUGC- -5' |
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9333 | 5' | -58.4 | NC_002512.2 | + | 193956 | 0.66 | 0.91335 |
Target: 5'- cGuCUGgCGCGAgaGGCCGCCGgcgagcucCUGACc -3' miRNA: 3'- cCuGACgGCGCU--CCGGCGGU--------GAUUGc -5' |
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9333 | 5' | -58.4 | NC_002512.2 | + | 135121 | 0.66 | 0.911656 |
Target: 5'- cGGAC-GgCGCGAcgcuccgagggccgGGCCGCC-CUggUGa -3' miRNA: 3'- -CCUGaCgGCGCU--------------CCGGCGGuGAuuGC- -5' |
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9333 | 5' | -58.4 | NC_002512.2 | + | 92131 | 0.66 | 0.907629 |
Target: 5'- cGGACacGCUGCGGGcGCUGCgGCgcguGCa -3' miRNA: 3'- -CCUGa-CGGCGCUC-CGGCGgUGau--UGc -5' |
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9333 | 5' | -58.4 | NC_002512.2 | + | 96508 | 0.66 | 0.907629 |
Target: 5'- cGGGCgaccGCCG-GAGGgaGCCGCgccGGCGg -3' miRNA: 3'- -CCUGa---CGGCgCUCCggCGGUGa--UUGC- -5' |
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9333 | 5' | -58.4 | NC_002512.2 | + | 110501 | 0.66 | 0.907629 |
Target: 5'- cGGccCUGCaGCaGGGCCGCCGCgu-CGu -3' miRNA: 3'- -CCu-GACGgCGcUCCGGCGGUGauuGC- -5' |
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9333 | 5' | -58.4 | NC_002512.2 | + | 127380 | 0.66 | 0.907629 |
Target: 5'- cGACgGCCGCGAcucCCGCgGCgggAACGa -3' miRNA: 3'- cCUGaCGGCGCUcc-GGCGgUGa--UUGC- -5' |
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9333 | 5' | -58.4 | NC_002512.2 | + | 165495 | 0.66 | 0.907629 |
Target: 5'- uGGCUGCgCGUGGGGCgcuucucccggCGCUGC-AACGg -3' miRNA: 3'- cCUGACG-GCGCUCCG-----------GCGGUGaUUGC- -5' |
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9333 | 5' | -58.4 | NC_002512.2 | + | 74627 | 0.66 | 0.907629 |
Target: 5'- cGGCUcCCGCGAGccgucgacGCCGCgACgGGCGg -3' miRNA: 3'- cCUGAcGGCGCUC--------CGGCGgUGaUUGC- -5' |
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9333 | 5' | -58.4 | NC_002512.2 | + | 201327 | 0.66 | 0.907629 |
Target: 5'- cGuCUGCCGCGAcgucagcguGGCCGaCAUcgGGCGg -3' miRNA: 3'- cCuGACGGCGCU---------CCGGCgGUGa-UUGC- -5' |
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9333 | 5' | -58.4 | NC_002512.2 | + | 129533 | 0.66 | 0.907045 |
Target: 5'- aGGACgacgccgUGCUGCGuGGCCGgCGCccGCc -3' miRNA: 3'- -CCUG-------ACGGCGCuCCGGCgGUGauUGc -5' |
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9333 | 5' | -58.4 | NC_002512.2 | + | 193542 | 0.66 | 0.901695 |
Target: 5'- cGGAgU-CCGCGGGGUCgGgCGCUGugGu -3' miRNA: 3'- -CCUgAcGGCGCUCCGG-CgGUGAUugC- -5' |
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9333 | 5' | -58.4 | NC_002512.2 | + | 99888 | 0.66 | 0.901695 |
Target: 5'- cGGACacggGCaCGCGGcGCCGCCggcGCUcccGGCGg -3' miRNA: 3'- -CCUGa---CG-GCGCUcCGGCGG---UGA---UUGC- -5' |
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9333 | 5' | -58.4 | NC_002512.2 | + | 219388 | 0.66 | 0.901695 |
Target: 5'- uGGGCUGCCuccGCuGGucGGcCCGCCGC-GACGc -3' miRNA: 3'- -CCUGACGG---CG-CU--CC-GGCGGUGaUUGC- -5' |
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9333 | 5' | -58.4 | NC_002512.2 | + | 191020 | 0.66 | 0.901695 |
Target: 5'- cGGACcgaggUGCCuGCGAGGCggggCGCgGCgcACGu -3' miRNA: 3'- -CCUG-----ACGG-CGCUCCG----GCGgUGauUGC- -5' |
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9333 | 5' | -58.4 | NC_002512.2 | + | 222428 | 0.66 | 0.899874 |
Target: 5'- cGGCaGCCGCGccgcggcuucccccGGGCCGCgGCcAACc -3' miRNA: 3'- cCUGaCGGCGC--------------UCCGGCGgUGaUUGc -5' |
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9333 | 5' | -58.4 | NC_002512.2 | + | 147837 | 0.66 | 0.89555 |
Target: 5'- cGACUccucccGCCGCGA--CCGCCGCcGGCGc -3' miRNA: 3'- cCUGA------CGGCGCUccGGCGGUGaUUGC- -5' |
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9333 | 5' | -58.4 | NC_002512.2 | + | 133483 | 0.66 | 0.89555 |
Target: 5'- aGGCUcgGUC-CGAGGCCGCCGgUGAg- -3' miRNA: 3'- cCUGA--CGGcGCUCCGGCGGUgAUUgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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