miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9334 3' -65.3 NC_002512.2 + 218425 0.66 0.65328
Target:  5'- cGCGGucucCGCcCCUUCCccggcccccgUCCGCGGCGUCc -3'
miRNA:   3'- -UGCCc---GCGcGGGAGG----------AGGCGCUGCGG- -5'
9334 3' -65.3 NC_002512.2 + 211579 0.66 0.65328
Target:  5'- uGCGGG-GCGUCCccaUCCccuUCUGCucCGCCg -3'
miRNA:   3'- -UGCCCgCGCGGG---AGG---AGGCGcuGCGG- -5'
9334 3' -65.3 NC_002512.2 + 187175 0.66 0.65328
Target:  5'- gACGuGGCcCGCCaUCUUCgGCGugccgGCGCCg -3'
miRNA:   3'- -UGC-CCGcGCGGgAGGAGgCGC-----UGCGG- -5'
9334 3' -65.3 NC_002512.2 + 180445 0.66 0.65328
Target:  5'- cCGGGCgGCGCCCgUCauuucucgacggCUCgGCGuCGCg -3'
miRNA:   3'- uGCCCG-CGCGGG-AG------------GAGgCGCuGCGg -5'
9334 3' -65.3 NC_002512.2 + 95778 0.66 0.65328
Target:  5'- gACGGGgGCGUCCgag-CgGUaGGCGCCg -3'
miRNA:   3'- -UGCCCgCGCGGGaggaGgCG-CUGCGG- -5'
9334 3' -65.3 NC_002512.2 + 120838 0.66 0.65328
Target:  5'- cUGGGCGaCGCguaCUUCCUCCccuCGaacGCGCCg -3'
miRNA:   3'- uGCCCGC-GCG---GGAGGAGGc--GC---UGCGG- -5'
9334 3' -65.3 NC_002512.2 + 91363 0.66 0.65328
Target:  5'- gACGGGCuggacgacGCGaCCCUgaagaCgCUGCGGCGCUg -3'
miRNA:   3'- -UGCCCG--------CGC-GGGAg----GaGGCGCUGCGG- -5'
9334 3' -65.3 NC_002512.2 + 127119 0.66 0.65328
Target:  5'- gAUGGGCGgGauaCCUCCcgaucccguaUCCGUagGGCGCg -3'
miRNA:   3'- -UGCCCGCgCg--GGAGG----------AGGCG--CUGCGg -5'
9334 3' -65.3 NC_002512.2 + 108797 0.66 0.652353
Target:  5'- uACGGGC-CGCUgcgggcgCUgUUCCGCGAgGCg -3'
miRNA:   3'- -UGCCCGcGCGG-------GAgGAGGCGCUgCGg -5'
9334 3' -65.3 NC_002512.2 + 173045 0.66 0.652353
Target:  5'- -gGGGUGUacgagGCCaUCCUCUGCGACaacugcggacacuGCCu -3'
miRNA:   3'- ugCCCGCG-----CGGgAGGAGGCGCUG-------------CGG- -5'
9334 3' -65.3 NC_002512.2 + 103644 0.66 0.652353
Target:  5'- uCGGacaccCG-GCCCUCCUCgGCGgccacgaGCGCCu -3'
miRNA:   3'- uGCCc----GCgCGGGAGGAGgCGC-------UGCGG- -5'
9334 3' -65.3 NC_002512.2 + 143766 0.66 0.644926
Target:  5'- -aGGucCGCGaCCUCCUCCGCGcccggguccaugagcCGCCg -3'
miRNA:   3'- ugCCc-GCGCgGGAGGAGGCGCu--------------GCGG- -5'
9334 3' -65.3 NC_002512.2 + 196220 0.66 0.643997
Target:  5'- --cGGCGCGUgagCCUCUgagacccugUCCGCcGCGCCc -3'
miRNA:   3'- ugcCCGCGCG---GGAGG---------AGGCGcUGCGG- -5'
9334 3' -65.3 NC_002512.2 + 179856 0.66 0.643997
Target:  5'- cGCGuGuGCGCGCCCaCCgUCaCGaCGACGUg -3'
miRNA:   3'- -UGC-C-CGCGCGGGaGG-AG-GC-GCUGCGg -5'
9334 3' -65.3 NC_002512.2 + 173552 0.66 0.643997
Target:  5'- cCGGGCuGUGCCgUCUaCuCGCGcuucagcuGCGCCg -3'
miRNA:   3'- uGCCCG-CGCGGgAGGaG-GCGC--------UGCGG- -5'
9334 3' -65.3 NC_002512.2 + 223550 0.66 0.643997
Target:  5'- cGCGGcccCGCGCCCggucCCcCCGCgGGCGgCg -3'
miRNA:   3'- -UGCCc--GCGCGGGa---GGaGGCG-CUGCgG- -5'
9334 3' -65.3 NC_002512.2 + 180895 0.66 0.643997
Target:  5'- cGCaGGC-CGUCUUCCagcUCCGCGuucucCGCCa -3'
miRNA:   3'- -UGcCCGcGCGGGAGG---AGGCGCu----GCGG- -5'
9334 3' -65.3 NC_002512.2 + 177012 0.66 0.643997
Target:  5'- gUGGGCGUcaggGCCg-CCUgCGCGuccCGCCa -3'
miRNA:   3'- uGCCCGCG----CGGgaGGAgGCGCu--GCGG- -5'
9334 3' -65.3 NC_002512.2 + 171870 0.66 0.643997
Target:  5'- -gGGGCGgaaCGCCgUCCUCgGCGucccccuCGUCc -3'
miRNA:   3'- ugCCCGC---GCGGgAGGAGgCGCu------GCGG- -5'
9334 3' -65.3 NC_002512.2 + 154504 0.66 0.643997
Target:  5'- gUGGGCGCGUCCUCgg--GCGAUgacucaGCCg -3'
miRNA:   3'- uGCCCGCGCGGGAGgaggCGCUG------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.