miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9334 5' -57.2 NC_002512.2 + 183353 0.66 0.937222
Target:  5'- aUGGAGGUCGaGCAGAAGaaccUCGg- -3'
miRNA:   3'- -ACCUCCAGCcCGUCUUCgccaAGCac -5'
9334 5' -57.2 NC_002512.2 + 227236 0.66 0.937222
Target:  5'- gGGAGG-CGcGGCGGAcgGGCGGgcaUCa-- -3'
miRNA:   3'- aCCUCCaGC-CCGUCU--UCGCCa--AGcac -5'
9334 5' -57.2 NC_002512.2 + 221262 0.66 0.927441
Target:  5'- cGGAaGUCGGG-GGAcGCGGggcgCGUGg -3'
miRNA:   3'- aCCUcCAGCCCgUCUuCGCCaa--GCAC- -5'
9334 5' -57.2 NC_002512.2 + 77784 0.66 0.91677
Target:  5'- --cGGGUCGGGCGGA--CGGUUCc-- -3'
miRNA:   3'- accUCCAGCCCGUCUucGCCAAGcac -5'
9334 5' -57.2 NC_002512.2 + 228430 0.66 0.91677
Target:  5'- cGGGGGcgggaaCGGGgAGGAGCGGacgcgCGUa -3'
miRNA:   3'- aCCUCCa-----GCCCgUCUUCGCCaa---GCAc -5'
9334 5' -57.2 NC_002512.2 + 93012 0.66 0.91677
Target:  5'- gUGGcGGaCGGGCAGcuGUGGUUCc-- -3'
miRNA:   3'- -ACCuCCaGCCCGUCuuCGCCAAGcac -5'
9334 5' -57.2 NC_002512.2 + 219702 0.66 0.911102
Target:  5'- aGGAGcGUCGGcGCucggggcgcgAGAGGCGGccccCGUGc -3'
miRNA:   3'- aCCUC-CAGCC-CG----------UCUUCGCCaa--GCAC- -5'
9334 5' -57.2 NC_002512.2 + 75783 0.66 0.911102
Target:  5'- gGGAGGaCgGGGCAGA-GCGGgggagCGg- -3'
miRNA:   3'- aCCUCCaG-CCCGUCUuCGCCaa---GCac -5'
9334 5' -57.2 NC_002512.2 + 111249 0.67 0.905213
Target:  5'- cGGAGcGUCGGGCGGcacGCGGa----- -3'
miRNA:   3'- aCCUC-CAGCCCGUCuu-CGCCaagcac -5'
9334 5' -57.2 NC_002512.2 + 224148 0.67 0.905213
Target:  5'- gGGAGG-CGGacGCGuGAGGCGGggCGg- -3'
miRNA:   3'- aCCUCCaGCC--CGU-CUUCGCCaaGCac -5'
9334 5' -57.2 NC_002512.2 + 227104 0.67 0.905213
Target:  5'- cGGccGGGUCGGGCucagacggGGGAGCGGgugCa-- -3'
miRNA:   3'- aCC--UCCAGCCCG--------UCUUCGCCaa-Gcac -5'
9334 5' -57.2 NC_002512.2 + 163926 0.67 0.899105
Target:  5'- -cGAGGUCGGGUAcGAGU--UUCGUGa -3'
miRNA:   3'- acCUCCAGCCCGUcUUCGccAAGCAC- -5'
9334 5' -57.2 NC_002512.2 + 152911 0.67 0.899105
Target:  5'- cGGuccccGGUCGGucaGCGGGAGCGGUccccggUCGg- -3'
miRNA:   3'- aCCu----CCAGCC---CGUCUUCGCCA------AGCac -5'
9334 5' -57.2 NC_002512.2 + 91103 0.67 0.892782
Target:  5'- aGGAGGaCGGGCccguggcgcuGGAGCaGUUCGa- -3'
miRNA:   3'- aCCUCCaGCCCGu---------CUUCGcCAAGCac -5'
9334 5' -57.2 NC_002512.2 + 27999 0.67 0.8795
Target:  5'- aGGAGGUCGcGGUAcc-GUGGgaCGUGa -3'
miRNA:   3'- aCCUCCAGC-CCGUcuuCGCCaaGCAC- -5'
9334 5' -57.2 NC_002512.2 + 217835 0.68 0.858049
Target:  5'- cGGGcGGUUcGGCAGAGGCGGcagCGg- -3'
miRNA:   3'- aCCU-CCAGcCCGUCUUCGCCaa-GCac -5'
9334 5' -57.2 NC_002512.2 + 93778 0.69 0.826816
Target:  5'- gGGAGGUCGGG----AGCGGaUCGg- -3'
miRNA:   3'- aCCUCCAGCCCgucuUCGCCaAGCac -5'
9334 5' -57.2 NC_002512.2 + 193710 0.69 0.810183
Target:  5'- aUGGAGGUCGuacGCAgGGAGCugcucgaGUUCGUGg -3'
miRNA:   3'- -ACCUCCAGCc--CGU-CUUCGc------CAAGCAC- -5'
9334 5' -57.2 NC_002512.2 + 153016 0.69 0.810183
Target:  5'- cGGucGGGUC-GGCGGGAGCGGUccccggUCGg- -3'
miRNA:   3'- aCC--UCCAGcCCGUCUUCGCCA------AGCac -5'
9334 5' -57.2 NC_002512.2 + 152966 0.69 0.810183
Target:  5'- cGGucGGGUC-GGCGGGAGCGGUccccggUCGg- -3'
miRNA:   3'- aCC--UCCAGcCCGUCUUCGCCA------AGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.