miRNA display CGI


Results 41 - 60 of 121 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9335 3' -62.1 NC_002512.2 + 91874 0.67 0.707876
Target:  5'- -gCCGCCGUcCGGcgcGGGCGGCGgCG-Cg -3'
miRNA:   3'- gaGGCGGCA-GCU---CCUGCCGCgGCaGa -5'
9335 3' -62.1 NC_002512.2 + 223263 0.67 0.698603
Target:  5'- gUCCGCguCGUCgGGGGGCGGgaCGCCG-Cg -3'
miRNA:   3'- gAGGCG--GCAG-CUCCUGCC--GCGGCaGa -5'
9335 3' -62.1 NC_002512.2 + 222646 0.67 0.698603
Target:  5'- gCUCCGCCG-CGAcGGcCGGCcggGCCGa-- -3'
miRNA:   3'- -GAGGCGGCaGCU-CCuGCCG---CGGCaga -5'
9335 3' -62.1 NC_002512.2 + 212458 0.67 0.698603
Target:  5'- -aCCGCCG-CGAGGAgGGCauCCGcCUc -3'
miRNA:   3'- gaGGCGGCaGCUCCUgCCGc-GGCaGA- -5'
9335 3' -62.1 NC_002512.2 + 189239 0.67 0.689283
Target:  5'- -gUCGCCGUCGcGGACGuCaCCGUCg -3'
miRNA:   3'- gaGGCGGCAGCuCCUGCcGcGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 185858 0.67 0.689283
Target:  5'- -gCgGUaCGUCGAGGAgGGCGCC-UCg -3'
miRNA:   3'- gaGgCG-GCAGCUCCUgCCGCGGcAGa -5'
9335 3' -62.1 NC_002512.2 + 185029 0.67 0.723508
Target:  5'- -gCCGUCGUCGGGGAgagcccuaggauccUGGaCGCCGa-- -3'
miRNA:   3'- gaGGCGGCAGCUCCU--------------GCC-GCGGCaga -5'
9335 3' -62.1 NC_002512.2 + 226530 0.67 0.723508
Target:  5'- -gCCGCCGUCcucgaucggaggaaGAGGAaGGCGUCGg-- -3'
miRNA:   3'- gaGGCGGCAG--------------CUCCUgCCGCGGCaga -5'
9335 3' -62.1 NC_002512.2 + 109839 0.67 0.726248
Target:  5'- -aCCGCCGggcgUCGGGGAcCGGCGUgG-Cg -3'
miRNA:   3'- gaGGCGGC----AGCUCCU-GCCGCGgCaGa -5'
9335 3' -62.1 NC_002512.2 + 149473 0.67 0.738947
Target:  5'- -gCCGCCGacagccacgccaccaUCGGGGGCGG-GUgGUCa -3'
miRNA:   3'- gaGGCGGC---------------AGCUCCUGCCgCGgCAGa -5'
9335 3' -62.1 NC_002512.2 + 100968 0.67 0.735334
Target:  5'- -gUCGCUGUCGAGGGCgggaaaGGCGaccaCGUUg -3'
miRNA:   3'- gaGGCGGCAGCUCCUG------CCGCg---GCAGa -5'
9335 3' -62.1 NC_002512.2 + 219163 0.67 0.735334
Target:  5'- cCUCCGCC---GAGGACuucGcCGCCGUCg -3'
miRNA:   3'- -GAGGCGGcagCUCCUGc--C-GCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 217596 0.67 0.735334
Target:  5'- -gCCGCCucgggggucGUCGGcgacucGGGCGGCGCCacggGUCUc -3'
miRNA:   3'- gaGGCGG---------CAGCU------CCUGCCGCGG----CAGA- -5'
9335 3' -62.1 NC_002512.2 + 181406 0.67 0.735334
Target:  5'- cCUCCGCCG---GGGACGcGUucaggaugGCCGUCa -3'
miRNA:   3'- -GAGGCGGCagcUCCUGC-CG--------CGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 154650 0.67 0.735334
Target:  5'- -aCCGCCGUccCGAGcGACcguccgacgucgGGCGaCCGUCc -3'
miRNA:   3'- gaGGCGGCA--GCUC-CUG------------CCGC-GGCAGa -5'
9335 3' -62.1 NC_002512.2 + 111634 0.67 0.735334
Target:  5'- --gCGCUGUagaCGuggugcuccAGGACGGUGCCGUCc -3'
miRNA:   3'- gagGCGGCA---GC---------UCCUGCCGCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 224922 0.67 0.726248
Target:  5'- cCUCCGUCG-CGGGGAccggguccgugcCGGUGUCGcUCg -3'
miRNA:   3'- -GAGGCGGCaGCUCCU------------GCCGCGGC-AGa -5'
9335 3' -62.1 NC_002512.2 + 182449 0.67 0.726248
Target:  5'- cCUCCGCCGUgCGGGcG-UGGUGCuCGUg- -3'
miRNA:   3'- -GAGGCGGCA-GCUC-CuGCCGCG-GCAga -5'
9335 3' -62.1 NC_002512.2 + 185362 0.68 0.677108
Target:  5'- -aUCGCCGUCGAcugcgacaccuucgGcGGCGGCugcgagGCCGUCUu -3'
miRNA:   3'- gaGGCGGCAGCU--------------C-CUGCCG------CGGCAGA- -5'
9335 3' -62.1 NC_002512.2 + 198244 0.68 0.670529
Target:  5'- --gCGCCGUCcGGGACGGCcuccauguaguGCCGgagCUg -3'
miRNA:   3'- gagGCGGCAGcUCCUGCCG-----------CGGCa--GA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.