Results 61 - 80 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
9335 | 3' | -62.1 | NC_002512.2 | + | 157125 | 0.68 | 0.642213 |
Target: 5'- -cCCGgCGUCGGGGGuCGGCGgCGg-- -3' miRNA: 3'- gaGGCgGCAGCUCCU-GCCGCgGCaga -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 148433 | 0.68 | 0.642213 |
Target: 5'- -aCCGCCGgggGAGGACGgGgGCCGg-- -3' miRNA: 3'- gaGGCGGCag-CUCCUGC-CgCGGCaga -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 178231 | 0.68 | 0.632753 |
Target: 5'- gUCCaggGUCucCGGGGACGGCGCgGUCUc -3' miRNA: 3'- gAGG---CGGcaGCUCCUGCCGCGgCAGA- -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 101905 | 0.68 | 0.632753 |
Target: 5'- --aCGCCGaCGGGGGCGGCGUguUCUc -3' miRNA: 3'- gagGCGGCaGCUCCUGCCGCGgcAGA- -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 187446 | 0.68 | 0.632753 |
Target: 5'- uCUUCGCCGagGAGG-CGGC-CCGUg- -3' miRNA: 3'- -GAGGCGGCagCUCCuGCCGcGGCAga -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 90383 | 0.68 | 0.651667 |
Target: 5'- gUCUGCaCGcUCGAGGucuugcCGGCGCCGg-- -3' miRNA: 3'- gAGGCG-GC-AGCUCCu-----GCCGCGGCaga -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 214764 | 0.68 | 0.651667 |
Target: 5'- --gUGCCGUCGcAGucCGGCGCCgGUCg -3' miRNA: 3'- gagGCGGCAGC-UCcuGCCGCGG-CAGa -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 105552 | 0.68 | 0.651667 |
Target: 5'- aCUCC-CCGUUGAcggucaggcucaGGACGuaGCCGUCc -3' miRNA: 3'- -GAGGcGGCAGCU------------CCUGCcgCGGCAGa -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 221753 | 0.68 | 0.679923 |
Target: 5'- --gCGCCGUCGAacggcagcuGGGCGGCcGUCGUg- -3' miRNA: 3'- gagGCGGCAGCU---------CCUGCCG-CGGCAga -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 185362 | 0.68 | 0.677108 |
Target: 5'- -aUCGCCGUCGAcugcgacaccuucgGcGGCGGCugcgagGCCGUCUu -3' miRNA: 3'- gaGGCGGCAGCU--------------C-CUGCCG------CGGCAGA- -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 198244 | 0.68 | 0.670529 |
Target: 5'- --gCGCCGUCcGGGACGGCcuccauguaguGCCGgagCUg -3' miRNA: 3'- gagGCGGCAGcUCCUGCCG-----------CGGCa--GA- -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 149222 | 0.68 | 0.670529 |
Target: 5'- -gCCGCCGcCGcGGGAccgacggaccCGGCGCCGcCg -3' miRNA: 3'- gaGGCGGCaGC-UCCU----------GCCGCGGCaGa -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 174081 | 0.68 | 0.661108 |
Target: 5'- -aCCGCCG-CGcGGAUGGCGCuCGa-- -3' miRNA: 3'- gaGGCGGCaGCuCCUGCCGCG-GCaga -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 132148 | 0.68 | 0.661108 |
Target: 5'- -aCCGCCaccUCGAGGucggugagcGCGGCGUCGUg- -3' miRNA: 3'- gaGGCGGc--AGCUCC---------UGCCGCGGCAga -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 213220 | 0.68 | 0.651667 |
Target: 5'- -aCCGCCGggUCGuGGccgccaACGGCGCCGg-- -3' miRNA: 3'- gaGGCGGC--AGCuCC------UGCCGCGGCaga -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 221152 | 0.69 | 0.613836 |
Target: 5'- -cCCGUCGUCGAcGGGCGGgCGCgCG-Cg -3' miRNA: 3'- gaGGCGGCAGCU-CCUGCC-GCG-GCaGa -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 95742 | 0.69 | 0.613836 |
Target: 5'- -cCCGCCGgCcGGGACGcGCGCCG-Cg -3' miRNA: 3'- gaGGCGGCaGcUCCUGC-CGCGGCaGa -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 145320 | 0.69 | 0.613836 |
Target: 5'- uUCCGCaacuaCGUCGAGGuCGaGCGCC-UCg -3' miRNA: 3'- gAGGCG-----GCAGCUCCuGC-CGCGGcAGa -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 87974 | 0.69 | 0.613836 |
Target: 5'- -aCC-CCGUCGGGGccGCGGCGCCc--- -3' miRNA: 3'- gaGGcGGCAGCUCC--UGCCGCGGcaga -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 223196 | 0.69 | 0.613836 |
Target: 5'- -gCCGcCCGaCGGGGACGGCGUcccggagcgCGUCc -3' miRNA: 3'- gaGGC-GGCaGCUCCUGCCGCG---------GCAGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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