miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9335 3' -62.1 NC_002512.2 + 155594 0.71 0.501933
Target:  5'- gUCCuCCGUCGAGGaccacggggacguGCGGCGCCuGUg- -3'
miRNA:   3'- gAGGcGGCAGCUCC-------------UGCCGCGG-CAga -5'
9335 3' -62.1 NC_002512.2 + 128378 0.71 0.459081
Target:  5'- cCUCC-CCGUCGccGGCGGCGgaccCCGUCUc -3'
miRNA:   3'- -GAGGcGGCAGCucCUGCCGC----GGCAGA- -5'
9335 3' -62.1 NC_002512.2 + 95686 0.7 0.548292
Target:  5'- gUCCGCCGggccuccggCGGGGACGGgggGCCGg-- -3'
miRNA:   3'- gAGGCGGCa--------GCUCCUGCCg--CGGCaga -5'
9335 3' -62.1 NC_002512.2 + 127474 0.7 0.56685
Target:  5'- aCUCUGCCGUCc-GGacGCGGCGaCGUCg -3'
miRNA:   3'- -GAGGCGGCAGcuCC--UGCCGCgGCAGa -5'
9335 3' -62.1 NC_002512.2 + 225264 0.7 0.56685
Target:  5'- uCUCCGCCag-GAGGGCguccucGGCGuCCGUCUc -3'
miRNA:   3'- -GAGGCGGcagCUCCUG------CCGC-GGCAGA- -5'
9335 3' -62.1 NC_002512.2 + 223815 0.7 0.56685
Target:  5'- -aCCGCCGggaCGAcGACGGCG-CGUCg -3'
miRNA:   3'- gaGGCGGCa--GCUcCUGCCGCgGCAGa -5'
9335 3' -62.1 NC_002512.2 + 215208 0.7 0.557549
Target:  5'- uCUUCGUCGgCG-GGGCGGacaaCGCCGUCUa -3'
miRNA:   3'- -GAGGCGGCaGCuCCUGCC----GCGGCAGA- -5'
9335 3' -62.1 NC_002512.2 + 122094 0.7 0.557549
Target:  5'- --gCGCCGgacgCGAGGuCGGCGCugaCGUCg -3'
miRNA:   3'- gagGCGGCa---GCUCCuGCCGCG---GCAGa -5'
9335 3' -62.1 NC_002512.2 + 195805 0.7 0.548292
Target:  5'- gCUCCGCUG-CGGGGAcaucgucgaCGcCGCCGUCg -3'
miRNA:   3'- -GAGGCGGCaGCUCCU---------GCcGCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 165070 0.7 0.56685
Target:  5'- uCUUCGCCGagggcaGAGGACGuGC-CCGUCg -3'
miRNA:   3'- -GAGGCGGCag----CUCCUGC-CGcGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 166245 0.7 0.529929
Target:  5'- -aCUG-CGUCcAGGACGGCGCuCGUCa -3'
miRNA:   3'- gaGGCgGCAGcUCCUGCCGCG-GCAGa -5'
9335 3' -62.1 NC_002512.2 + 126656 0.69 0.584625
Target:  5'- -gCgGCCGUCGAcGGGCGGCgacgcgaGCCGcCUc -3'
miRNA:   3'- gaGgCGGCAGCU-CCUGCCG-------CGGCaGA- -5'
9335 3' -62.1 NC_002512.2 + 212825 0.69 0.594966
Target:  5'- uUCCgcGCCGcCGGGGuugggcGCgGGCGCCGUCc -3'
miRNA:   3'- gAGG--CGGCaGCUCC------UG-CCGCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 214451 0.69 0.623291
Target:  5'- --aCGUCGgCGAGGACGaG-GCCGUCUa -3'
miRNA:   3'- gagGCGGCaGCUCCUGC-CgCGGCAGA- -5'
9335 3' -62.1 NC_002512.2 + 200311 0.69 0.594966
Target:  5'- gUCCGCCcUCGGGGAgCGGCuucccGCCGg-- -3'
miRNA:   3'- gAGGCGGcAGCUCCU-GCCG-----CGGCaga -5'
9335 3' -62.1 NC_002512.2 + 195288 0.69 0.594966
Target:  5'- uUCC-CCG-CGGGGGcCGGCGCCGa-- -3'
miRNA:   3'- gAGGcGGCaGCUCCU-GCCGCGGCaga -5'
9335 3' -62.1 NC_002512.2 + 207509 0.69 0.57619
Target:  5'- aUCCGCgaccgaCGaCGAGGACGGgGCCG-Cg -3'
miRNA:   3'- gAGGCG------GCaGCUCCUGCCgCGGCaGa -5'
9335 3' -62.1 NC_002512.2 + 223196 0.69 0.613836
Target:  5'- -gCCGcCCGaCGGGGACGGCGUcccggagcgCGUCc -3'
miRNA:   3'- gaGGC-GGCaGCUCCUGCCGCG---------GCAGa -5'
9335 3' -62.1 NC_002512.2 + 171859 0.69 0.604392
Target:  5'- -gCgGCCGggaGGGGGCGGaaCGCCGUCc -3'
miRNA:   3'- gaGgCGGCag-CUCCUGCC--GCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 221152 0.69 0.613836
Target:  5'- -cCCGUCGUCGAcGGGCGGgCGCgCG-Cg -3'
miRNA:   3'- gaGGCGGCAGCU-CCUGCC-GCG-GCaGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.