miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9335 3' -62.1 NC_002512.2 + 221152 0.69 0.613836
Target:  5'- -cCCGUCGUCGAcGGGCGGgCGCgCG-Cg -3'
miRNA:   3'- gaGGCGGCAGCU-CCUGCC-GCG-GCaGa -5'
9335 3' -62.1 NC_002512.2 + 95742 0.69 0.613836
Target:  5'- -cCCGCCGgCcGGGACGcGCGCCG-Cg -3'
miRNA:   3'- gaGGCGGCaGcUCCUGC-CGCGGCaGa -5'
9335 3' -62.1 NC_002512.2 + 145320 0.69 0.613836
Target:  5'- uUCCGCaacuaCGUCGAGGuCGaGCGCC-UCg -3'
miRNA:   3'- gAGGCG-----GCAGCUCCuGC-CGCGGcAGa -5'
9335 3' -62.1 NC_002512.2 + 87974 0.69 0.613836
Target:  5'- -aCC-CCGUCGGGGccGCGGCGCCc--- -3'
miRNA:   3'- gaGGcGGCAGCUCC--UGCCGCGGcaga -5'
9335 3' -62.1 NC_002512.2 + 223196 0.69 0.613836
Target:  5'- -gCCGcCCGaCGGGGACGGCGUcccggagcgCGUCc -3'
miRNA:   3'- gaGGC-GGCaGCUCCUGCCGCG---------GCAGa -5'
9335 3' -62.1 NC_002512.2 + 214451 0.69 0.623291
Target:  5'- --aCGUCGgCGAGGACGaG-GCCGUCUa -3'
miRNA:   3'- gagGCGGCaGCUCCUGC-CgCGGCAGA- -5'
9335 3' -62.1 NC_002512.2 + 187446 0.68 0.632753
Target:  5'- uCUUCGCCGagGAGG-CGGC-CCGUg- -3'
miRNA:   3'- -GAGGCGGCagCUCCuGCCGcGGCAga -5'
9335 3' -62.1 NC_002512.2 + 101905 0.68 0.632753
Target:  5'- --aCGCCGaCGGGGGCGGCGUguUCUc -3'
miRNA:   3'- gagGCGGCaGCUCCUGCCGCGgcAGA- -5'
9335 3' -62.1 NC_002512.2 + 178231 0.68 0.632753
Target:  5'- gUCCaggGUCucCGGGGACGGCGCgGUCUc -3'
miRNA:   3'- gAGG---CGGcaGCUCCUGCCGCGgCAGA- -5'
9335 3' -62.1 NC_002512.2 + 105947 0.68 0.642213
Target:  5'- -cCCGCCGgcaCGAGucuGACGGCcagcccGCCGUCc -3'
miRNA:   3'- gaGGCGGCa--GCUC---CUGCCG------CGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 73588 0.68 0.642213
Target:  5'- -cCCGCCGaaaGAGGACGuGCaCCGUUg -3'
miRNA:   3'- gaGGCGGCag-CUCCUGC-CGcGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 157125 0.68 0.642213
Target:  5'- -cCCGgCGUCGGGGGuCGGCGgCGg-- -3'
miRNA:   3'- gaGGCgGCAGCUCCU-GCCGCgGCaga -5'
9335 3' -62.1 NC_002512.2 + 148433 0.68 0.642213
Target:  5'- -aCCGCCGgggGAGGACGgGgGCCGg-- -3'
miRNA:   3'- gaGGCGGCag-CUCCUGC-CgCGGCaga -5'
9335 3' -62.1 NC_002512.2 + 105552 0.68 0.651667
Target:  5'- aCUCC-CCGUUGAcggucaggcucaGGACGuaGCCGUCc -3'
miRNA:   3'- -GAGGcGGCAGCU------------CCUGCcgCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 90383 0.68 0.651667
Target:  5'- gUCUGCaCGcUCGAGGucuugcCGGCGCCGg-- -3'
miRNA:   3'- gAGGCG-GC-AGCUCCu-----GCCGCGGCaga -5'
9335 3' -62.1 NC_002512.2 + 214764 0.68 0.651667
Target:  5'- --gUGCCGUCGcAGucCGGCGCCgGUCg -3'
miRNA:   3'- gagGCGGCAGC-UCcuGCCGCGG-CAGa -5'
9335 3' -62.1 NC_002512.2 + 213220 0.68 0.651667
Target:  5'- -aCCGCCGggUCGuGGccgccaACGGCGCCGg-- -3'
miRNA:   3'- gaGGCGGC--AGCuCC------UGCCGCGGCaga -5'
9335 3' -62.1 NC_002512.2 + 132148 0.68 0.661108
Target:  5'- -aCCGCCaccUCGAGGucggugagcGCGGCGUCGUg- -3'
miRNA:   3'- gaGGCGGc--AGCUCC---------UGCCGCGGCAga -5'
9335 3' -62.1 NC_002512.2 + 174081 0.68 0.661108
Target:  5'- -aCCGCCG-CGcGGAUGGCGCuCGa-- -3'
miRNA:   3'- gaGGCGGCaGCuCCUGCCGCG-GCaga -5'
9335 3' -62.1 NC_002512.2 + 149222 0.68 0.670529
Target:  5'- -gCCGCCGcCGcGGGAccgacggaccCGGCGCCGcCg -3'
miRNA:   3'- gaGGCGGCaGC-UCCU----------GCCGCGGCaGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.