miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9335 3' -62.1 NC_002512.2 + 146107 0.73 0.401446
Target:  5'- cCUCgGCgG-CGGcGGCGGCGCCGUCUu -3'
miRNA:   3'- -GAGgCGgCaGCUcCUGCCGCGGCAGA- -5'
9335 3' -62.1 NC_002512.2 + 148433 0.68 0.642213
Target:  5'- -aCCGCCGgggGAGGACGgGgGCCGg-- -3'
miRNA:   3'- gaGGCGGCag-CUCCUGC-CgCGGCaga -5'
9335 3' -62.1 NC_002512.2 + 149071 0.66 0.762103
Target:  5'- gCUCCGCCGacgcCGAGG-CGcGCGCgCG-CUc -3'
miRNA:   3'- -GAGGCGGCa---GCUCCuGC-CGCG-GCaGA- -5'
9335 3' -62.1 NC_002512.2 + 149153 0.73 0.401446
Target:  5'- -aCCGCCG-CGGGGcCGGUGCCGcCc -3'
miRNA:   3'- gaGGCGGCaGCUCCuGCCGCGGCaGa -5'
9335 3' -62.1 NC_002512.2 + 149222 0.68 0.670529
Target:  5'- -gCCGCCGcCGcGGGAccgacggaccCGGCGCCGcCg -3'
miRNA:   3'- gaGGCGGCaGC-UCCU----------GCCGCGGCaGa -5'
9335 3' -62.1 NC_002512.2 + 149473 0.67 0.738947
Target:  5'- -gCCGCCGacagccacgccaccaUCGGGGGCGG-GUgGUCa -3'
miRNA:   3'- gaGGCGGC---------------AGCUCCUGCCgCGgCAGa -5'
9335 3' -62.1 NC_002512.2 + 150505 0.66 0.753269
Target:  5'- gUCCGCCcgcggGUCGGGGugcaguuccacGCGGCgGCCG-Cg -3'
miRNA:   3'- gAGGCGG-----CAGCUCC-----------UGCCG-CGGCaGa -5'
9335 3' -62.1 NC_002512.2 + 154650 0.67 0.735334
Target:  5'- -aCCGCCGUccCGAGcGACcguccgacgucgGGCGaCCGUCc -3'
miRNA:   3'- gaGGCGGCA--GCUC-CUG------------CCGC-GGCAGa -5'
9335 3' -62.1 NC_002512.2 + 154704 0.66 0.796383
Target:  5'- gUCCGgCGUCGAgcggcgcgacGGaACGGCGUugCGUCc -3'
miRNA:   3'- gAGGCgGCAGCU----------CC-UGCCGCG--GCAGa -5'
9335 3' -62.1 NC_002512.2 + 155594 0.71 0.501933
Target:  5'- gUCCuCCGUCGAGGaccacggggacguGCGGCGCCuGUg- -3'
miRNA:   3'- gAGGcGGCAGCUCC-------------UGCCGCGG-CAga -5'
9335 3' -62.1 NC_002512.2 + 156605 0.71 0.476345
Target:  5'- -aCCGCCauGUaCGAGGA-GGCGCUGUCc -3'
miRNA:   3'- gaGGCGG--CA-GCUCCUgCCGCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 157125 0.68 0.642213
Target:  5'- -cCCGgCGUCGGGGGuCGGCGgCGg-- -3'
miRNA:   3'- gaGGCgGCAGCUCCU-GCCGCgGCaga -5'
9335 3' -62.1 NC_002512.2 + 164731 0.73 0.378194
Target:  5'- aCUCCGaCGUCGAGGACcgguagcGCGCCGcCa -3'
miRNA:   3'- -GAGGCgGCAGCUCCUGc------CGCGGCaGa -5'
9335 3' -62.1 NC_002512.2 + 165070 0.7 0.56685
Target:  5'- uCUUCGCCGagggcaGAGGACGuGC-CCGUCg -3'
miRNA:   3'- -GAGGCGGCag----CUCCUGC-CGcGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 166245 0.7 0.529929
Target:  5'- -aCUG-CGUCcAGGACGGCGCuCGUCa -3'
miRNA:   3'- gaGGCgGCAGcUCCUGCCGCG-GCAGa -5'
9335 3' -62.1 NC_002512.2 + 166438 0.74 0.320749
Target:  5'- -cCCGCCGUCcuccggGGGcGACGGCGCCGggCUc -3'
miRNA:   3'- gaGGCGGCAG------CUC-CUGCCGCGGCa-GA- -5'
9335 3' -62.1 NC_002512.2 + 171859 0.69 0.604392
Target:  5'- -gCgGCCGggaGGGGGCGGaaCGCCGUCc -3'
miRNA:   3'- gaGgCGGCag-CUCCUGCC--GCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 171998 0.66 0.770839
Target:  5'- -aUCGCCGUCGccGuCGcCGCCGUCg -3'
miRNA:   3'- gaGGCGGCAGCucCuGCcGCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 173529 0.74 0.341499
Target:  5'- aUCCGuCCGUCGGGGccgucugcccggGCuGUGCCGUCUa -3'
miRNA:   3'- gAGGC-GGCAGCUCC------------UGcCGCGGCAGA- -5'
9335 3' -62.1 NC_002512.2 + 174081 0.68 0.661108
Target:  5'- -aCCGCCG-CGcGGAUGGCGCuCGa-- -3'
miRNA:   3'- gaGGCGGCaGCuCCUGCCGCG-GCaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.