Results 61 - 80 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9335 | 3' | -62.1 | NC_002512.2 | + | 176528 | 0.66 | 0.787986 |
Target: 5'- gCUUgGCCGUCacguaGGGGAgGGUggucuccgccGCCGUCa -3' miRNA: 3'- -GAGgCGGCAG-----CUCCUgCCG----------CGGCAGa -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 177572 | 0.66 | 0.779469 |
Target: 5'- ---gGCCGUCGccAGGAUGcGCGCCagcGUCUc -3' miRNA: 3'- gaggCGGCAGC--UCCUGC-CGCGG---CAGA- -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 178231 | 0.68 | 0.632753 |
Target: 5'- gUCCaggGUCucCGGGGACGGCGCgGUCUc -3' miRNA: 3'- gAGG---CGGcaGCUCCUGCCGCGgCAGA- -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 179392 | 0.66 | 0.779469 |
Target: 5'- -aUCGCC-UCGGGGAUGcGCGCCaUCc -3' miRNA: 3'- gaGGCGGcAGCUCCUGC-CGCGGcAGa -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 180299 | 0.66 | 0.753269 |
Target: 5'- -gUCGCCcUCGAcaGGcgcaGCGGCGUCGUCa -3' miRNA: 3'- gaGGCGGcAGCU--CC----UGCCGCGGCAGa -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 181406 | 0.67 | 0.735334 |
Target: 5'- cCUCCGCCG---GGGACGcGUucaggaugGCCGUCa -3' miRNA: 3'- -GAGGCGGCagcUCCUGC-CG--------CGGCAGa -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 182449 | 0.67 | 0.726248 |
Target: 5'- cCUCCGCCGUgCGGGcG-UGGUGCuCGUg- -3' miRNA: 3'- -GAGGCGGCA-GCUC-CuGCCGCG-GCAga -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 184400 | 0.66 | 0.762103 |
Target: 5'- -gCCGCCGcCGGGGGgcgcuCGGCcuucuCCGUCg -3' miRNA: 3'- gaGGCGGCaGCUCCU-----GCCGc----GGCAGa -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 185029 | 0.67 | 0.723508 |
Target: 5'- -gCCGUCGUCGGGGAgagcccuaggauccUGGaCGCCGa-- -3' miRNA: 3'- gaGGCGGCAGCUCCU--------------GCC-GCGGCaga -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 185362 | 0.68 | 0.677108 |
Target: 5'- -aUCGCCGUCGAcugcgacaccuucgGcGGCGGCugcgagGCCGUCUu -3' miRNA: 3'- gaGGCGGCAGCU--------------C-CUGCCG------CGGCAGA- -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 185858 | 0.67 | 0.689283 |
Target: 5'- -gCgGUaCGUCGAGGAgGGCGCC-UCg -3' miRNA: 3'- gaGgCG-GCAGCUCCUgCCGCGGcAGa -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 187446 | 0.68 | 0.632753 |
Target: 5'- uCUUCGCCGagGAGG-CGGC-CCGUg- -3' miRNA: 3'- -GAGGCGGCagCUCCuGCCGcGGCAga -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 189239 | 0.67 | 0.689283 |
Target: 5'- -gUCGCCGUCGcGGACGuCaCCGUCg -3' miRNA: 3'- gaGGCGGCAGCuCCUGCcGcGGCAGa -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 190413 | 0.66 | 0.753269 |
Target: 5'- uUCUGUCGcCGGGGgcugcgggaGCGG-GCCGUCa -3' miRNA: 3'- gAGGCGGCaGCUCC---------UGCCgCGGCAGa -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 190965 | 0.71 | 0.459081 |
Target: 5'- -cCCGCCG-CGGcGGccccucCGGCGCCGUCg -3' miRNA: 3'- gaGGCGGCaGCU-CCu-----GCCGCGGCAGa -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 191449 | 0.69 | 0.604392 |
Target: 5'- aCUCCGCCcggggcGUUGAGGugGGCcgaguacgaggcGCCGg-- -3' miRNA: 3'- -GAGGCGG------CAGCUCCugCCG------------CGGCaga -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 195288 | 0.69 | 0.594966 |
Target: 5'- uUCC-CCG-CGGGGGcCGGCGCCGa-- -3' miRNA: 3'- gAGGcGGCaGCUCCU-GCCGCGGCaga -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 195805 | 0.7 | 0.548292 |
Target: 5'- gCUCCGCUG-CGGGGAcaucgucgaCGcCGCCGUCg -3' miRNA: 3'- -GAGGCGGCaGCUCCU---------GCcGCGGCAGa -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 196829 | 0.66 | 0.762103 |
Target: 5'- uUCUGCgaCGggcugCGGcGGAUGGaCGCCGUCUa -3' miRNA: 3'- gAGGCG--GCa----GCU-CCUGCC-GCGGCAGA- -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 198244 | 0.68 | 0.670529 |
Target: 5'- --gCGCCGUCcGGGACGGCcuccauguaguGCCGgagCUg -3' miRNA: 3'- gagGCGGCAGcUCCUGCCG-----------CGGCa--GA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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