miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9335 3' -62.1 NC_002512.2 + 215639 0.71 0.485097
Target:  5'- uCUUCGCCGU-GGGGcuGCGG-GCCGUCa -3'
miRNA:   3'- -GAGGCGGCAgCUCC--UGCCgCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 215539 0.69 0.611002
Target:  5'- cCUCCgggagauccugcugGCCGUCGGcGccuCGGCGUCGUCUa -3'
miRNA:   3'- -GAGG--------------CGGCAGCUcCu--GCCGCGGCAGA- -5'
9335 3' -62.1 NC_002512.2 + 215208 0.7 0.557549
Target:  5'- uCUUCGUCGgCG-GGGCGGacaaCGCCGUCUa -3'
miRNA:   3'- -GAGGCGGCaGCuCCUGCC----GCGGCAGA- -5'
9335 3' -62.1 NC_002512.2 + 215038 0.72 0.425589
Target:  5'- cCUCUGCUGUccCGAGGAgcucaccgucguCGGCGgCGUCUa -3'
miRNA:   3'- -GAGGCGGCA--GCUCCU------------GCCGCgGCAGA- -5'
9335 3' -62.1 NC_002512.2 + 214764 0.68 0.651667
Target:  5'- --gUGCCGUCGcAGucCGGCGCCgGUCg -3'
miRNA:   3'- gagGCGGCAGC-UCcuGCCGCGG-CAGa -5'
9335 3' -62.1 NC_002512.2 + 214451 0.69 0.623291
Target:  5'- --aCGUCGgCGAGGACGaG-GCCGUCUa -3'
miRNA:   3'- gagGCGGCaGCUCCUGC-CgCGGCAGA- -5'
9335 3' -62.1 NC_002512.2 + 213638 0.66 0.762103
Target:  5'- -gCCGCCG-CGGGcGACGGCGaCGa-- -3'
miRNA:   3'- gaGGCGGCaGCUC-CUGCCGCgGCaga -5'
9335 3' -62.1 NC_002512.2 + 213220 0.68 0.651667
Target:  5'- -aCCGCCGggUCGuGGccgccaACGGCGCCGg-- -3'
miRNA:   3'- gaGGCGGC--AGCuCC------UGCCGCGGCaga -5'
9335 3' -62.1 NC_002512.2 + 212825 0.69 0.594966
Target:  5'- uUCCgcGCCGcCGGGGuugggcGCgGGCGCCGUCc -3'
miRNA:   3'- gAGG--CGGCaGCUCC------UG-CCGCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 212458 0.67 0.698603
Target:  5'- -aCCGCCG-CGAGGAgGGCauCCGcCUc -3'
miRNA:   3'- gaGGCGGCaGCUCCUgCCGc-GGCaGA- -5'
9335 3' -62.1 NC_002512.2 + 209013 0.66 0.796383
Target:  5'- -cCCGUCGUCGccgccaugagcGGGGCGGC-CgCGUCc -3'
miRNA:   3'- gaGGCGGCAGC-----------UCCUGCCGcG-GCAGa -5'
9335 3' -62.1 NC_002512.2 + 207769 0.79 0.167212
Target:  5'- -gCCGCCGUgGugguugcGGGACGGCGUCGUCUc -3'
miRNA:   3'- gaGGCGGCAgC-------UCCUGCCGCGGCAGA- -5'
9335 3' -62.1 NC_002512.2 + 207509 0.69 0.57619
Target:  5'- aUCCGCgaccgaCGaCGAGGACGGgGCCG-Cg -3'
miRNA:   3'- gAGGCG------GCaGCUCCUGCCgCGGCaGa -5'
9335 3' -62.1 NC_002512.2 + 206846 0.66 0.751491
Target:  5'- gUCCaGCUucacgaucuucuUCGGGGGCGGCGCCGa-- -3'
miRNA:   3'- gAGG-CGGc-----------AGCUCCUGCCGCGGCaga -5'
9335 3' -62.1 NC_002512.2 + 202948 0.69 0.604392
Target:  5'- gCUCCGCCGccgguaCGAGGucaguuucaGGCGCCGg-- -3'
miRNA:   3'- -GAGGCGGCa-----GCUCCug-------CCGCGGCaga -5'
9335 3' -62.1 NC_002512.2 + 202145 0.66 0.779469
Target:  5'- -gCCGCCGcCGcGGGGCGG-GUgGUCg -3'
miRNA:   3'- gaGGCGGCaGC-UCCUGCCgCGgCAGa -5'
9335 3' -62.1 NC_002512.2 + 201869 0.72 0.450575
Target:  5'- -cCUGCgGUcCGAGGACGGCGgcggcuucuCCGUCUc -3'
miRNA:   3'- gaGGCGgCA-GCUCCUGCCGC---------GGCAGA- -5'
9335 3' -62.1 NC_002512.2 + 201667 0.66 0.762103
Target:  5'- -gCCGCgGUuccuucuucggCGAGGGCGGC-CgCGUCUg -3'
miRNA:   3'- gaGGCGgCA-----------GCUCCUGCCGcG-GCAGA- -5'
9335 3' -62.1 NC_002512.2 + 201613 0.71 0.493925
Target:  5'- uCUCCGCCagcGcCGAGcGguaGGCGCCGUCg -3'
miRNA:   3'- -GAGGCGG---CaGCUC-Cug-CCGCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 200487 0.66 0.787986
Target:  5'- ---aGUCGUgCGAGGGCGGCGUCcUCc -3'
miRNA:   3'- gaggCGGCA-GCUCCUGCCGCGGcAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.