miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9335 3' -62.1 NC_002512.2 + 200311 0.69 0.594966
Target:  5'- gUCCGCCcUCGGGGAgCGGCuucccGCCGg-- -3'
miRNA:   3'- gAGGCGGcAGCUCCU-GCCG-----CGGCaga -5'
9335 3' -62.1 NC_002512.2 + 198244 0.68 0.670529
Target:  5'- --gCGCCGUCcGGGACGGCcuccauguaguGCCGgagCUg -3'
miRNA:   3'- gagGCGGCAGcUCCUGCCG-----------CGGCa--GA- -5'
9335 3' -62.1 NC_002512.2 + 196829 0.66 0.762103
Target:  5'- uUCUGCgaCGggcugCGGcGGAUGGaCGCCGUCUa -3'
miRNA:   3'- gAGGCG--GCa----GCU-CCUGCC-GCGGCAGA- -5'
9335 3' -62.1 NC_002512.2 + 195805 0.7 0.548292
Target:  5'- gCUCCGCUG-CGGGGAcaucgucgaCGcCGCCGUCg -3'
miRNA:   3'- -GAGGCGGCaGCUCCU---------GCcGCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 195288 0.69 0.594966
Target:  5'- uUCC-CCG-CGGGGGcCGGCGCCGa-- -3'
miRNA:   3'- gAGGcGGCaGCUCCU-GCCGCGGCaga -5'
9335 3' -62.1 NC_002512.2 + 191449 0.69 0.604392
Target:  5'- aCUCCGCCcggggcGUUGAGGugGGCcgaguacgaggcGCCGg-- -3'
miRNA:   3'- -GAGGCGG------CAGCUCCugCCG------------CGGCaga -5'
9335 3' -62.1 NC_002512.2 + 190965 0.71 0.459081
Target:  5'- -cCCGCCG-CGGcGGccccucCGGCGCCGUCg -3'
miRNA:   3'- gaGGCGGCaGCU-CCu-----GCCGCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 190413 0.66 0.753269
Target:  5'- uUCUGUCGcCGGGGgcugcgggaGCGG-GCCGUCa -3'
miRNA:   3'- gAGGCGGCaGCUCC---------UGCCgCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 189239 0.67 0.689283
Target:  5'- -gUCGCCGUCGcGGACGuCaCCGUCg -3'
miRNA:   3'- gaGGCGGCAGCuCCUGCcGcGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 187446 0.68 0.632753
Target:  5'- uCUUCGCCGagGAGG-CGGC-CCGUg- -3'
miRNA:   3'- -GAGGCGGCagCUCCuGCCGcGGCAga -5'
9335 3' -62.1 NC_002512.2 + 185858 0.67 0.689283
Target:  5'- -gCgGUaCGUCGAGGAgGGCGCC-UCg -3'
miRNA:   3'- gaGgCG-GCAGCUCCUgCCGCGGcAGa -5'
9335 3' -62.1 NC_002512.2 + 185362 0.68 0.677108
Target:  5'- -aUCGCCGUCGAcugcgacaccuucgGcGGCGGCugcgagGCCGUCUu -3'
miRNA:   3'- gaGGCGGCAGCU--------------C-CUGCCG------CGGCAGA- -5'
9335 3' -62.1 NC_002512.2 + 185029 0.67 0.723508
Target:  5'- -gCCGUCGUCGGGGAgagcccuaggauccUGGaCGCCGa-- -3'
miRNA:   3'- gaGGCGGCAGCUCCU--------------GCC-GCGGCaga -5'
9335 3' -62.1 NC_002512.2 + 184400 0.66 0.762103
Target:  5'- -gCCGCCGcCGGGGGgcgcuCGGCcuucuCCGUCg -3'
miRNA:   3'- gaGGCGGCaGCUCCU-----GCCGc----GGCAGa -5'
9335 3' -62.1 NC_002512.2 + 182449 0.67 0.726248
Target:  5'- cCUCCGCCGUgCGGGcG-UGGUGCuCGUg- -3'
miRNA:   3'- -GAGGCGGCA-GCUC-CuGCCGCG-GCAga -5'
9335 3' -62.1 NC_002512.2 + 181406 0.67 0.735334
Target:  5'- cCUCCGCCG---GGGACGcGUucaggaugGCCGUCa -3'
miRNA:   3'- -GAGGCGGCagcUCCUGC-CG--------CGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 180299 0.66 0.753269
Target:  5'- -gUCGCCcUCGAcaGGcgcaGCGGCGUCGUCa -3'
miRNA:   3'- gaGGCGGcAGCU--CC----UGCCGCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 179392 0.66 0.779469
Target:  5'- -aUCGCC-UCGGGGAUGcGCGCCaUCc -3'
miRNA:   3'- gaGGCGGcAGCUCCUGC-CGCGGcAGa -5'
9335 3' -62.1 NC_002512.2 + 178231 0.68 0.632753
Target:  5'- gUCCaggGUCucCGGGGACGGCGCgGUCUc -3'
miRNA:   3'- gAGG---CGGcaGCUCCUGCCGCGgCAGA- -5'
9335 3' -62.1 NC_002512.2 + 177572 0.66 0.779469
Target:  5'- ---gGCCGUCGccAGGAUGcGCGCCagcGUCUc -3'
miRNA:   3'- gaggCGGCAGC--UCCUGC-CGCGG---CAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.