miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9335 3' -62.1 NC_002512.2 + 176528 0.66 0.787986
Target:  5'- gCUUgGCCGUCacguaGGGGAgGGUggucuccgccGCCGUCa -3'
miRNA:   3'- -GAGgCGGCAG-----CUCCUgCCG----------CGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 227058 0.66 0.787986
Target:  5'- -cCCGCCGUCGuccGGGCccgcgcccGCGCCGg-- -3'
miRNA:   3'- gaGGCGGCAGCu--CCUGc-------CGCGGCaga -5'
9335 3' -62.1 NC_002512.2 + 3198 0.66 0.796383
Target:  5'- -gUCGUCGUCGAacGuGuCGGuCGCCGUCa -3'
miRNA:   3'- gaGGCGGCAGCU--C-CuGCC-GCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 227661 0.66 0.796383
Target:  5'- gUCCGgaGgaaGAGcGGCGGCGCCGcCg -3'
miRNA:   3'- gAGGCggCag-CUC-CUGCCGCGGCaGa -5'
9335 3' -62.1 NC_002512.2 + 154704 0.66 0.796383
Target:  5'- gUCCGgCGUCGAgcggcgcgacGGaACGGCGUugCGUCc -3'
miRNA:   3'- gAGGCgGCAGCU----------CC-UGCCGCG--GCAGa -5'
9335 3' -62.1 NC_002512.2 + 202145 0.66 0.779469
Target:  5'- -gCCGCCGcCGcGGGGCGG-GUgGUCg -3'
miRNA:   3'- gaGGCGGCaGC-UCCUGCCgCGgCAGa -5'
9335 3' -62.1 NC_002512.2 + 143191 0.66 0.779469
Target:  5'- --gCGCCcugcaCGAGGGUGGUGCCGUCc -3'
miRNA:   3'- gagGCGGca---GCUCCUGCCGCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 190413 0.66 0.753269
Target:  5'- uUCUGUCGcCGGGGgcugcgggaGCGG-GCCGUCa -3'
miRNA:   3'- gAGGCGGCaGCUCC---------UGCCgCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 180299 0.66 0.753269
Target:  5'- -gUCGCCcUCGAcaGGcgcaGCGGCGUCGUCa -3'
miRNA:   3'- gaGGCGGcAGCU--CC----UGCCGCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 149071 0.66 0.762103
Target:  5'- gCUCCGCCGacgcCGAGG-CGcGCGCgCG-CUc -3'
miRNA:   3'- -GAGGCGGCa---GCUCCuGC-CGCG-GCaGA- -5'
9335 3' -62.1 NC_002512.2 + 184400 0.66 0.762103
Target:  5'- -gCCGCCGcCGGGGGgcgcuCGGCcuucuCCGUCg -3'
miRNA:   3'- gaGGCGGCaGCUCCU-----GCCGc----GGCAGa -5'
9335 3' -62.1 NC_002512.2 + 196829 0.66 0.762103
Target:  5'- uUCUGCgaCGggcugCGGcGGAUGGaCGCCGUCUa -3'
miRNA:   3'- gAGGCG--GCa----GCU-CCUGCC-GCGGCAGA- -5'
9335 3' -62.1 NC_002512.2 + 213638 0.66 0.762103
Target:  5'- -gCCGCCG-CGGGcGACGGCGaCGa-- -3'
miRNA:   3'- gaGGCGGCaGCUC-CUGCCGCgGCaga -5'
9335 3' -62.1 NC_002512.2 + 76474 0.66 0.762103
Target:  5'- uUCCGacaGUCGAGGACcugGGCcUCGUCg -3'
miRNA:   3'- gAGGCgg-CAGCUCCUG---CCGcGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 133886 0.66 0.762103
Target:  5'- uUCCGCCuggCGGucGCGGCGCCGg-- -3'
miRNA:   3'- gAGGCGGca-GCUccUGCCGCGGCaga -5'
9335 3' -62.1 NC_002512.2 + 201667 0.66 0.762103
Target:  5'- -gCCGCgGUuccuucuucggCGAGGGCGGC-CgCGUCUg -3'
miRNA:   3'- gaGGCGgCA-----------GCUCCUGCCGcG-GCAGA- -5'
9335 3' -62.1 NC_002512.2 + 226201 0.66 0.762103
Target:  5'- -aCCuCCGUCGGGGACGGgaggaccucCGgaCCGUCg -3'
miRNA:   3'- gaGGcGGCAGCUCCUGCC---------GC--GGCAGa -5'
9335 3' -62.1 NC_002512.2 + 100073 0.66 0.770839
Target:  5'- -gCCGCgGgcCGGGGACGGaGCgGUCa -3'
miRNA:   3'- gaGGCGgCa-GCUCCUGCCgCGgCAGa -5'
9335 3' -62.1 NC_002512.2 + 171998 0.66 0.770839
Target:  5'- -aUCGCCGUCGccGuCGcCGCCGUCg -3'
miRNA:   3'- gaGGCGGCAGCucCuGCcGCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 95555 0.66 0.779469
Target:  5'- gCUCgGCCGcggCGAGuccguCGGCGCCGg-- -3'
miRNA:   3'- -GAGgCGGCa--GCUCcu---GCCGCGGCaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.