Results 81 - 100 of 121 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9335 | 3' | -62.1 | NC_002512.2 | + | 154650 | 0.67 | 0.735334 |
Target: 5'- -aCCGCCGUccCGAGcGACcguccgacgucgGGCGaCCGUCc -3' miRNA: 3'- gaGGCGGCA--GCUC-CUG------------CCGC-GGCAGa -5' |
|||||||
9335 | 3' | -62.1 | NC_002512.2 | + | 111634 | 0.67 | 0.735334 |
Target: 5'- --gCGCUGUagaCGuggugcuccAGGACGGUGCCGUCc -3' miRNA: 3'- gagGCGGCA---GC---------UCCUGCCGCGGCAGa -5' |
|||||||
9335 | 3' | -62.1 | NC_002512.2 | + | 224922 | 0.67 | 0.726248 |
Target: 5'- cCUCCGUCG-CGGGGAccggguccgugcCGGUGUCGcUCg -3' miRNA: 3'- -GAGGCGGCaGCUCCU------------GCCGCGGC-AGa -5' |
|||||||
9335 | 3' | -62.1 | NC_002512.2 | + | 182449 | 0.67 | 0.726248 |
Target: 5'- cCUCCGCCGUgCGGGcG-UGGUGCuCGUg- -3' miRNA: 3'- -GAGGCGGCA-GCUC-CuGCCGCG-GCAga -5' |
|||||||
9335 | 3' | -62.1 | NC_002512.2 | + | 109839 | 0.67 | 0.726248 |
Target: 5'- -aCCGCCGggcgUCGGGGAcCGGCGUgG-Cg -3' miRNA: 3'- gaGGCGGC----AGCUCCU-GCCGCGgCaGa -5' |
|||||||
9335 | 3' | -62.1 | NC_002512.2 | + | 226530 | 0.67 | 0.723508 |
Target: 5'- -gCCGCCGUCcucgaucggaggaaGAGGAaGGCGUCGg-- -3' miRNA: 3'- gaGGCGGCAG--------------CUCCUgCCGCGGCaga -5' |
|||||||
9335 | 3' | -62.1 | NC_002512.2 | + | 185029 | 0.67 | 0.723508 |
Target: 5'- -gCCGUCGUCGGGGAgagcccuaggauccUGGaCGCCGa-- -3' miRNA: 3'- gaGGCGGCAGCUCCU--------------GCC-GCGGCaga -5' |
|||||||
9335 | 3' | -62.1 | NC_002512.2 | + | 100968 | 0.67 | 0.735334 |
Target: 5'- -gUCGCUGUCGAGGGCgggaaaGGCGaccaCGUUg -3' miRNA: 3'- gaGGCGGCAGCUCCUG------CCGCg---GCAGa -5' |
|||||||
9335 | 3' | -62.1 | NC_002512.2 | + | 149473 | 0.67 | 0.738947 |
Target: 5'- -gCCGCCGacagccacgccaccaUCGGGGGCGG-GUgGUCa -3' miRNA: 3'- gaGGCGGC---------------AGCUCCUGCCgCGgCAGa -5' |
|||||||
9335 | 3' | -62.1 | NC_002512.2 | + | 33180 | 0.66 | 0.744343 |
Target: 5'- gUCaagaGCCgGUCGGgcuggcGGACGGUGCCGcUCg -3' miRNA: 3'- gAGg---CGG-CAGCU------CCUGCCGCGGC-AGa -5' |
|||||||
9335 | 3' | -62.1 | NC_002512.2 | + | 149071 | 0.66 | 0.762103 |
Target: 5'- gCUCCGCCGacgcCGAGG-CGcGCGCgCG-CUc -3' miRNA: 3'- -GAGGCGGCa---GCUCCuGC-CGCG-GCaGA- -5' |
|||||||
9335 | 3' | -62.1 | NC_002512.2 | + | 180299 | 0.66 | 0.753269 |
Target: 5'- -gUCGCCcUCGAcaGGcgcaGCGGCGUCGUCa -3' miRNA: 3'- gaGGCGGcAGCU--CC----UGCCGCGGCAGa -5' |
|||||||
9335 | 3' | -62.1 | NC_002512.2 | + | 190413 | 0.66 | 0.753269 |
Target: 5'- uUCUGUCGcCGGGGgcugcgggaGCGG-GCCGUCa -3' miRNA: 3'- gAGGCGGCaGCUCC---------UGCCgCGGCAGa -5' |
|||||||
9335 | 3' | -62.1 | NC_002512.2 | + | 150505 | 0.66 | 0.753269 |
Target: 5'- gUCCGCCcgcggGUCGGGGugcaguuccacGCGGCgGCCG-Cg -3' miRNA: 3'- gAGGCGG-----CAGCUCC-----------UGCCG-CGGCaGa -5' |
|||||||
9335 | 3' | -62.1 | NC_002512.2 | + | 145685 | 0.66 | 0.753269 |
Target: 5'- gUCCGCgGaCGAGuGGCuGCGCCG-CUg -3' miRNA: 3'- gAGGCGgCaGCUC-CUGcCGCGGCaGA- -5' |
|||||||
9335 | 3' | -62.1 | NC_002512.2 | + | 100871 | 0.66 | 0.753269 |
Target: 5'- -aCUGCagGUUGAGGaaGCGGaUGCCGUCg -3' miRNA: 3'- gaGGCGg-CAGCUCC--UGCC-GCGGCAGa -5' |
|||||||
9335 | 3' | -62.1 | NC_002512.2 | + | 206846 | 0.66 | 0.751491 |
Target: 5'- gUCCaGCUucacgaucuucuUCGGGGGCGGCGCCGa-- -3' miRNA: 3'- gAGG-CGGc-----------AGCUCCUGCCGCGGCaga -5' |
|||||||
9335 | 3' | -62.1 | NC_002512.2 | + | 222533 | 0.66 | 0.744343 |
Target: 5'- -gCCGCCGUCGcGGugggccgggcuACGGCGacccgaCCGUCc -3' miRNA: 3'- gaGGCGGCAGCuCC-----------UGCCGC------GGCAGa -5' |
|||||||
9335 | 3' | -62.1 | NC_002512.2 | + | 102402 | 0.66 | 0.744343 |
Target: 5'- -cCCGCC--CGAGGGCGGCgGCCa--- -3' miRNA: 3'- gaGGCGGcaGCUCCUGCCG-CGGcaga -5' |
|||||||
9335 | 3' | -62.1 | NC_002512.2 | + | 96113 | 0.66 | 0.744343 |
Target: 5'- -gCCGCCGUCGucGuCGuCGUCGUCg -3' miRNA: 3'- gaGGCGGCAGCucCuGCcGCGGCAGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home