miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9335 3' -62.1 NC_002512.2 + 184400 0.66 0.762103
Target:  5'- -gCCGCCGcCGGGGGgcgcuCGGCcuucuCCGUCg -3'
miRNA:   3'- gaGGCGGCaGCUCCU-----GCCGc----GGCAGa -5'
9335 3' -62.1 NC_002512.2 + 196829 0.66 0.762103
Target:  5'- uUCUGCgaCGggcugCGGcGGAUGGaCGCCGUCUa -3'
miRNA:   3'- gAGGCG--GCa----GCU-CCUGCC-GCGGCAGA- -5'
9335 3' -62.1 NC_002512.2 + 213638 0.66 0.762103
Target:  5'- -gCCGCCG-CGGGcGACGGCGaCGa-- -3'
miRNA:   3'- gaGGCGGCaGCUC-CUGCCGCgGCaga -5'
9335 3' -62.1 NC_002512.2 + 76474 0.66 0.762103
Target:  5'- uUCCGacaGUCGAGGACcugGGCcUCGUCg -3'
miRNA:   3'- gAGGCgg-CAGCUCCUG---CCGcGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 133886 0.66 0.762103
Target:  5'- uUCCGCCuggCGGucGCGGCGCCGg-- -3'
miRNA:   3'- gAGGCGGca-GCUccUGCCGCGGCaga -5'
9335 3' -62.1 NC_002512.2 + 201667 0.66 0.762103
Target:  5'- -gCCGCgGUuccuucuucggCGAGGGCGGC-CgCGUCUg -3'
miRNA:   3'- gaGGCGgCA-----------GCUCCUGCCGcG-GCAGA- -5'
9335 3' -62.1 NC_002512.2 + 226201 0.66 0.762103
Target:  5'- -aCCuCCGUCGGGGACGGgaggaccucCGgaCCGUCg -3'
miRNA:   3'- gaGGcGGCAGCUCCUGCC---------GC--GGCAGa -5'
9335 3' -62.1 NC_002512.2 + 180299 0.66 0.753269
Target:  5'- -gUCGCCcUCGAcaGGcgcaGCGGCGUCGUCa -3'
miRNA:   3'- gaGGCGGcAGCU--CC----UGCCGCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 190413 0.66 0.753269
Target:  5'- uUCUGUCGcCGGGGgcugcgggaGCGG-GCCGUCa -3'
miRNA:   3'- gAGGCGGCaGCUCC---------UGCCgCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 150505 0.66 0.753269
Target:  5'- gUCCGCCcgcggGUCGGGGugcaguuccacGCGGCgGCCG-Cg -3'
miRNA:   3'- gAGGCGG-----CAGCUCC-----------UGCCG-CGGCaGa -5'
9335 3' -62.1 NC_002512.2 + 145685 0.66 0.753269
Target:  5'- gUCCGCgGaCGAGuGGCuGCGCCG-CUg -3'
miRNA:   3'- gAGGCGgCaGCUC-CUGcCGCGGCaGA- -5'
9335 3' -62.1 NC_002512.2 + 100871 0.66 0.753269
Target:  5'- -aCUGCagGUUGAGGaaGCGGaUGCCGUCg -3'
miRNA:   3'- gaGGCGg-CAGCUCC--UGCC-GCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 206846 0.66 0.751491
Target:  5'- gUCCaGCUucacgaucuucuUCGGGGGCGGCGCCGa-- -3'
miRNA:   3'- gAGG-CGGc-----------AGCUCCUGCCGCGGCaga -5'
9335 3' -62.1 NC_002512.2 + 222533 0.66 0.744343
Target:  5'- -gCCGCCGUCGcGGugggccgggcuACGGCGacccgaCCGUCc -3'
miRNA:   3'- gaGGCGGCAGCuCC-----------UGCCGC------GGCAGa -5'
9335 3' -62.1 NC_002512.2 + 102402 0.66 0.744343
Target:  5'- -cCCGCC--CGAGGGCGGCgGCCa--- -3'
miRNA:   3'- gaGGCGGcaGCUCCUGCCG-CGGcaga -5'
9335 3' -62.1 NC_002512.2 + 96113 0.66 0.744343
Target:  5'- -gCCGCCGUCGucGuCGuCGUCGUCg -3'
miRNA:   3'- gaGGCGGCAGCucCuGCcGCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 33180 0.66 0.744343
Target:  5'- gUCaagaGCCgGUCGGgcuggcGGACGGUGCCGcUCg -3'
miRNA:   3'- gAGg---CGG-CAGCU------CCUGCCGCGGC-AGa -5'
9335 3' -62.1 NC_002512.2 + 149473 0.67 0.738947
Target:  5'- -gCCGCCGacagccacgccaccaUCGGGGGCGG-GUgGUCa -3'
miRNA:   3'- gaGGCGGC---------------AGCUCCUGCCgCGgCAGa -5'
9335 3' -62.1 NC_002512.2 + 219163 0.67 0.735334
Target:  5'- cCUCCGCC---GAGGACuucGcCGCCGUCg -3'
miRNA:   3'- -GAGGCGGcagCUCCUGc--C-GCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 217596 0.67 0.735334
Target:  5'- -gCCGCCucgggggucGUCGGcgacucGGGCGGCGCCacggGUCUc -3'
miRNA:   3'- gaGGCGG---------CAGCU------CCUGCCGCGG----CAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.