miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9336 3' -52 NC_002512.2 + 198250 0.65 0.998015
Target:  5'- uCCGgGACGGCCUCca-UGUAgugccggagcugCUCGAg -3'
miRNA:   3'- -GGUgCUGCUGGAGaagACGUa-----------GAGCU- -5'
9336 3' -52 NC_002512.2 + 183016 0.66 0.997876
Target:  5'- gCGCGGCGAggUCaccgUCUGCAguugcacggccgagaUCUCGAu -3'
miRNA:   3'- gGUGCUGCUggAGa---AGACGU---------------AGAGCU- -5'
9336 3' -52 NC_002512.2 + 192269 0.66 0.997728
Target:  5'- aCGCGAgCGugCUCgggacgcUCUGCGUCgUCa- -3'
miRNA:   3'- gGUGCU-GCugGAGa------AGACGUAG-AGcu -5'
9336 3' -52 NC_002512.2 + 127488 0.66 0.997728
Target:  5'- aCGCGGCGACgUCggCUGgAacCUCGGc -3'
miRNA:   3'- gGUGCUGCUGgAGaaGACgUa-GAGCU- -5'
9336 3' -52 NC_002512.2 + 222651 0.66 0.997531
Target:  5'- gCCGCGACGGCCggccgggccgagggGCGcCUCGAg -3'
miRNA:   3'- -GGUGCUGCUGGagaaga--------CGUaGAGCU- -5'
9336 3' -52 NC_002512.2 + 218358 0.66 0.99732
Target:  5'- uCCAgGuCGAUCcCgUUCUGCAUCUCc- -3'
miRNA:   3'- -GGUgCuGCUGGaG-AAGACGUAGAGcu -5'
9336 3' -52 NC_002512.2 + 176101 0.66 0.996854
Target:  5'- gCCugGAUcuucugcagcugGGCCUCgaagUCUaauccGUAUCUCGAu -3'
miRNA:   3'- -GGugCUG------------CUGGAGa---AGA-----CGUAGAGCU- -5'
9336 3' -52 NC_002512.2 + 91330 0.66 0.996854
Target:  5'- cUCACGGCGGCgCUCcgcucCUGCcagcugCUCGAc -3'
miRNA:   3'- -GGUGCUGCUG-GAGaa---GACGua----GAGCU- -5'
9336 3' -52 NC_002512.2 + 199011 0.66 0.996854
Target:  5'- gUCuCGAUGGCCUC--CUGCGUCagGAa -3'
miRNA:   3'- -GGuGCUGCUGGAGaaGACGUAGagCU- -5'
9336 3' -52 NC_002512.2 + 215028 0.66 0.996543
Target:  5'- cCCGCGACuACCUCUgCUGUcccgaggagcucaccGUCgUCGGc -3'
miRNA:   3'- -GGUGCUGcUGGAGAaGACG---------------UAG-AGCU- -5'
9336 3' -52 NC_002512.2 + 161854 0.66 0.996322
Target:  5'- aCACGGCGucggcgguCCUCccgggUCggUGCGUCUCGu -3'
miRNA:   3'- gGUGCUGCu-------GGAGa----AG--ACGUAGAGCu -5'
9336 3' -52 NC_002512.2 + 104861 0.66 0.996322
Target:  5'- cUCACGGCGACCUCggccccgCggGCGUCcCu- -3'
miRNA:   3'- -GGUGCUGCUGGAGaa-----Ga-CGUAGaGcu -5'
9336 3' -52 NC_002512.2 + 164192 0.66 0.995718
Target:  5'- gCCuCGACGACUUCa--UGCAgggcCUCGGg -3'
miRNA:   3'- -GGuGCUGCUGGAGaagACGUa---GAGCU- -5'
9336 3' -52 NC_002512.2 + 124896 0.67 0.994269
Target:  5'- gUCACGGCGACCg-UUCgGCGUCg--- -3'
miRNA:   3'- -GGUGCUGCUGGagAAGaCGUAGagcu -5'
9336 3' -52 NC_002512.2 + 123213 0.67 0.993408
Target:  5'- aCCGCGACGcguACCgacgCUaCAUCUCGGa -3'
miRNA:   3'- -GGUGCUGC---UGGagaaGAcGUAGAGCU- -5'
9336 3' -52 NC_002512.2 + 204004 0.67 0.992447
Target:  5'- gUACGACcGCCUCUUCgGCuUCgugCGGg -3'
miRNA:   3'- gGUGCUGcUGGAGAAGaCGuAGa--GCU- -5'
9336 3' -52 NC_002512.2 + 181100 0.67 0.992447
Target:  5'- gCCGCGACGcccGCCUCa---GCGUCUgGGa -3'
miRNA:   3'- -GGUGCUGC---UGGAGaagaCGUAGAgCU- -5'
9336 3' -52 NC_002512.2 + 176808 0.67 0.992447
Target:  5'- uCCugGGCG-UCUCUgaUC-GCGUCUCGc -3'
miRNA:   3'- -GGugCUGCuGGAGA--AGaCGUAGAGCu -5'
9336 3' -52 NC_002512.2 + 217045 0.67 0.992447
Target:  5'- gUCACGGCGcagGCCgCgugCUGCAUgUCGGu -3'
miRNA:   3'- -GGUGCUGC---UGGaGaa-GACGUAgAGCU- -5'
9336 3' -52 NC_002512.2 + 195237 0.67 0.991378
Target:  5'- cCCGCGAUGucccgacgaaGCCUC--CUGUGUCUCGc -3'
miRNA:   3'- -GGUGCUGC----------UGGAGaaGACGUAGAGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.