miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9336 5' -66.1 NC_002512.2 + 164222 0.66 0.62285
Target:  5'- cCGCCGGGAagggcaUCGGCaugguguucggcgccGuGGCgGGGGCCGUc -3'
miRNA:   3'- -GCGGCCUUg-----GGCCG---------------C-CUG-CCCCGGCA- -5'
9336 5' -66.1 NC_002512.2 + 192476 0.66 0.619164
Target:  5'- uGUCGGAucgaCGcGCGGACGGGGaCGc -3'
miRNA:   3'- gCGGCCUugg-GC-CGCCUGCCCCgGCa -5'
9336 5' -66.1 NC_002512.2 + 227083 0.66 0.619164
Target:  5'- gCGCCGGGuCCCGcCGGcCGccGGCCGg -3'
miRNA:   3'- -GCGGCCUuGGGCcGCCuGCc-CCGGCa -5'
9336 5' -66.1 NC_002512.2 + 206561 0.66 0.619164
Target:  5'- cCGCCGGcGGCCCGG-GGcgccagaacuGCaGGuGCCGUa -3'
miRNA:   3'- -GCGGCC-UUGGGCCgCC----------UGcCC-CGGCA- -5'
9336 5' -66.1 NC_002512.2 + 132011 0.66 0.619164
Target:  5'- gCGCCGGGgggACCuCGGCGGcgACGucgucGGCCa- -3'
miRNA:   3'- -GCGGCCU---UGG-GCCGCC--UGCc----CCGGca -5'
9336 5' -66.1 NC_002512.2 + 226482 0.66 0.613637
Target:  5'- gGCCGGGGCCCGggcgcuccccucgccGCGGGuccugcUGGcGGCCc- -3'
miRNA:   3'- gCGGCCUUGGGC---------------CGCCU------GCC-CCGGca -5'
9336 5' -66.1 NC_002512.2 + 124857 0.66 0.609955
Target:  5'- cCGCgaCGaGGACCCGGacgagaacCGGGCGGcGGCCc- -3'
miRNA:   3'- -GCG--GC-CUUGGGCC--------GCCUGCC-CCGGca -5'
9336 5' -66.1 NC_002512.2 + 146708 0.66 0.609955
Target:  5'- gCGaCGGAGacgaCGGCgGGGCGGcGGCCGc -3'
miRNA:   3'- -GCgGCCUUgg--GCCG-CCUGCC-CCGGCa -5'
9336 5' -66.1 NC_002512.2 + 192828 0.66 0.609955
Target:  5'- -aCCGGGGCCaGGUGGACGaGGuuGa -3'
miRNA:   3'- gcGGCCUUGGgCCGCCUGCcCCggCa -5'
9336 5' -66.1 NC_002512.2 + 202133 0.66 0.609955
Target:  5'- gCGCCGGu-CUCGGCcgccgccgcgGGGCGGguGGUCGUu -3'
miRNA:   3'- -GCGGCCuuGGGCCG----------CCUGCC--CCGGCA- -5'
9336 5' -66.1 NC_002512.2 + 138178 0.66 0.609955
Target:  5'- cCGCCGGGcuGCgUGugcaucGCGGAcauccuaccguCGGGGCCGa -3'
miRNA:   3'- -GCGGCCU--UGgGC------CGCCU-----------GCCCCGGCa -5'
9336 5' -66.1 NC_002512.2 + 223816 0.66 0.609034
Target:  5'- cCGCCGGGACgacgaCGGCGcGuCGGaggggaaggaggaGGCCGa -3'
miRNA:   3'- -GCGGCCUUGg----GCCGC-CuGCC-------------CCGGCa -5'
9336 5' -66.1 NC_002512.2 + 171841 0.66 0.609034
Target:  5'- cCGCgGGAcgguccgGCCgCGGCcgGGAgGGGGCgGa -3'
miRNA:   3'- -GCGgCCU-------UGG-GCCG--CCUgCCCCGgCa -5'
9336 5' -66.1 NC_002512.2 + 212149 0.66 0.609034
Target:  5'- gCGUCGGcgGGCaCUGGCGGcgggacgGCuGGGCCGUc -3'
miRNA:   3'- -GCGGCC--UUG-GGCCGCC-------UGcCCCGGCA- -5'
9336 5' -66.1 NC_002512.2 + 211925 0.66 0.606275
Target:  5'- gCGUCGGGACCCcgacgggacguccGUGGACGagaGGGUCGg -3'
miRNA:   3'- -GCGGCCUUGGGc------------CGCCUGC---CCCGGCa -5'
9336 5' -66.1 NC_002512.2 + 150555 0.66 0.600759
Target:  5'- cCGCCGcGACCUGGgaGGggaggaggaGCGGGGCgCGg -3'
miRNA:   3'- -GCGGCcUUGGGCCg-CC---------UGCCCCG-GCa -5'
9336 5' -66.1 NC_002512.2 + 208871 0.66 0.600759
Target:  5'- -aUCGGcACUCGGgGGGacgggaGGGGCCGg -3'
miRNA:   3'- gcGGCCuUGGGCCgCCUg-----CCCCGGCa -5'
9336 5' -66.1 NC_002512.2 + 87836 0.66 0.600759
Target:  5'- gGCCGGGcgucggGCCCucGCGG-CGGGucGCCGg -3'
miRNA:   3'- gCGGCCU------UGGGc-CGCCuGCCC--CGGCa -5'
9336 5' -66.1 NC_002512.2 + 201754 0.66 0.600759
Target:  5'- gCGCCGau-CCCGGgGGACGGGaGggaCGa -3'
miRNA:   3'- -GCGGCcuuGGGCCgCCUGCCC-Cg--GCa -5'
9336 5' -66.1 NC_002512.2 + 219838 0.66 0.598922
Target:  5'- gGUCGGGggguccgGCCCGggggcggaucGCGGACGGgugacgaGGCCGg -3'
miRNA:   3'- gCGGCCU-------UGGGC----------CGCCUGCC-------CCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.