miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9337 3' -48.9 NC_002512.2 + 137254 0.66 0.999885
Target:  5'- --cCGGCGGCGaGcGCUGCGGgAUCg -3'
miRNA:   3'- cuuGCUGUCGCaCaUGACGUUgUAGg -5'
9337 3' -48.9 NC_002512.2 + 138183 0.69 0.995629
Target:  5'- ---gGGCuGCGUGUGCaucGCgGACAUCCu -3'
miRNA:   3'- cuugCUGuCGCACAUGa--CG-UUGUAGG- -5'
9337 3' -48.9 NC_002512.2 + 142979 0.7 0.991015
Target:  5'- cGAACGACAGgGUcucGUugUGCGGaaaGUCg -3'
miRNA:   3'- -CUUGCUGUCgCA---CAugACGUUg--UAGg -5'
9337 3' -48.9 NC_002512.2 + 146116 0.67 0.999616
Target:  5'- cGGCGGCGGCGccGUcuuCUGCAccuGCcgCCg -3'
miRNA:   3'- cUUGCUGUCGCa-CAu--GACGU---UGuaGG- -5'
9337 3' -48.9 NC_002512.2 + 146296 0.68 0.998681
Target:  5'- cGGCGACugcuucgacaccGGCGUGUACgGCcACggCCg -3'
miRNA:   3'- cUUGCUG------------UCGCACAUGaCGuUGuaGG- -5'
9337 3' -48.9 NC_002512.2 + 146715 0.7 0.994097
Target:  5'- aGACGACGGCGgggcgGcgGCcGCGGCcgCCg -3'
miRNA:   3'- cUUGCUGUCGCa----Ca-UGaCGUUGuaGG- -5'
9337 3' -48.9 NC_002512.2 + 148783 0.68 0.998411
Target:  5'- uGGGCGuCAGCGacucGUaccGCUGCGGCA-CCg -3'
miRNA:   3'- -CUUGCuGUCGCa---CA---UGACGUUGUaGG- -5'
9337 3' -48.9 NC_002512.2 + 152862 0.66 0.999758
Target:  5'- gGAACGuGCAGCcgGUGUGCgGgAGCgGUCCc -3'
miRNA:   3'- -CUUGC-UGUCG--CACAUGaCgUUG-UAGG- -5'
9337 3' -48.9 NC_002512.2 + 154726 0.69 0.995629
Target:  5'- gGAACGGCGuuGCGUccGCgGCcGCGUCCg -3'
miRNA:   3'- -CUUGCUGU--CGCAcaUGaCGuUGUAGG- -5'
9337 3' -48.9 NC_002512.2 + 162027 0.66 0.999885
Target:  5'- --cCGACGGCGaggugGUGCccgauucuaUGCGcguGCAUCCu -3'
miRNA:   3'- cuuGCUGUCGCa----CAUG---------ACGU---UGUAGG- -5'
9337 3' -48.9 NC_002512.2 + 169078 0.67 0.999616
Target:  5'- cGGCGGCGGCGUc-GCgGCccGCGUCCu -3'
miRNA:   3'- cUUGCUGUCGCAcaUGaCGu-UGUAGG- -5'
9337 3' -48.9 NC_002512.2 + 169555 0.67 0.999407
Target:  5'- --cCGGCGGCGUGgccuucGCcgGCGucuccGCGUCCg -3'
miRNA:   3'- cuuGCUGUCGCACa-----UGa-CGU-----UGUAGG- -5'
9337 3' -48.9 NC_002512.2 + 170101 0.8 0.709671
Target:  5'- ---gGGCAGCuUGUACUGCAGCcgCCg -3'
miRNA:   3'- cuugCUGUCGcACAUGACGUUGuaGG- -5'
9337 3' -48.9 NC_002512.2 + 170822 0.69 0.996821
Target:  5'- gGGGCGGCAGCGgcgGCaGCGGCGgcgacCCg -3'
miRNA:   3'- -CUUGCUGUCGCacaUGaCGUUGUa----GG- -5'
9337 3' -48.9 NC_002512.2 + 171449 0.68 0.998681
Target:  5'- cGAACGcCuGCGgaguCUGCAgcGCGUCCg -3'
miRNA:   3'- -CUUGCuGuCGCacauGACGU--UGUAGG- -5'
9337 3' -48.9 NC_002512.2 + 171806 0.7 0.993182
Target:  5'- cGACGGCGcGCGcuccUGCUGCccGGCAUCCg -3'
miRNA:   3'- cUUGCUGU-CGCac--AUGACG--UUGUAGG- -5'
9337 3' -48.9 NC_002512.2 + 172216 0.67 0.999616
Target:  5'- uGGugGACgAGC-UGUACUGUcGCuUCCu -3'
miRNA:   3'- -CUugCUG-UCGcACAUGACGuUGuAGG- -5'
9337 3' -48.9 NC_002512.2 + 175281 0.66 0.99981
Target:  5'- uGGCGGCcGCGUacacGUACucggggUGCAGCGUCg -3'
miRNA:   3'- cUUGCUGuCGCA----CAUG------ACGUUGUAGg -5'
9337 3' -48.9 NC_002512.2 + 181587 0.68 0.998411
Target:  5'- cGGCGGCAGgGgcgGCggguccGCGACGUCCu -3'
miRNA:   3'- cUUGCUGUCgCacaUGa-----CGUUGUAGG- -5'
9337 3' -48.9 NC_002512.2 + 182258 0.71 0.985082
Target:  5'- cAGCGACGGCGccaggacgGggaACUGC-ACGUCCg -3'
miRNA:   3'- cUUGCUGUCGCa-------Ca--UGACGuUGUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.