miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9337 5' -53.3 NC_002512.2 + 146900 0.66 0.990585
Target:  5'- cGCAGCUGgagGCGGC-CGACGUcuUCc -3'
miRNA:   3'- -CGUCGACagaCGCUGuGUUGCAccAG- -5'
9337 5' -53.3 NC_002512.2 + 119164 0.66 0.990585
Target:  5'- cGgAGCUGUCgcugaaCGACACGAcgcuCGUGGa- -3'
miRNA:   3'- -CgUCGACAGac----GCUGUGUU----GCACCag -5'
9337 5' -53.3 NC_002512.2 + 221257 0.66 0.982787
Target:  5'- cGCGGCggaaGUCggGgGACGCGgggcGCGUGGa- -3'
miRNA:   3'- -CGUCGa---CAGa-CgCUGUGU----UGCACCag -5'
9337 5' -53.3 NC_002512.2 + 43464 0.67 0.976203
Target:  5'- cGCGGCguuUCUGCu-CGCGGCGUcacaGGUCu -3'
miRNA:   3'- -CGUCGac-AGACGcuGUGUUGCA----CCAG- -5'
9337 5' -53.3 NC_002512.2 + 97145 0.67 0.973644
Target:  5'- uCAGCUGcCUggGCGACACGGCGUc--- -3'
miRNA:   3'- cGUCGACaGA--CGCUGUGUUGCAccag -5'
9337 5' -53.3 NC_002512.2 + 207172 0.67 0.972017
Target:  5'- gGUAGCUGUUgaugugccgccgggGCGACGCGu--UGGUCu -3'
miRNA:   3'- -CGUCGACAGa-------------CGCUGUGUugcACCAG- -5'
9337 5' -53.3 NC_002512.2 + 9150 0.67 0.970606
Target:  5'- aGCAGCUGUCUGUcuugucgGGuCAgGGCGUguGGUa -3'
miRNA:   3'- -CGUCGACAGACG-------CU-GUgUUGCA--CCAg -5'
9337 5' -53.3 NC_002512.2 + 211754 0.68 0.954011
Target:  5'- cGCGGCccgGgcgCUGCGGgAgGACGUGGa- -3'
miRNA:   3'- -CGUCGa--Ca--GACGCUgUgUUGCACCag -5'
9337 5' -53.3 NC_002512.2 + 217854 0.69 0.949975
Target:  5'- gGCAGCgGUCUGCc---CGGCGUGGg- -3'
miRNA:   3'- -CGUCGaCAGACGcuguGUUGCACCag -5'
9337 5' -53.3 NC_002512.2 + 186285 0.7 0.908065
Target:  5'- cGCAGCcuccgcguccucGUCcGCGACGC--CGUGGUCa -3'
miRNA:   3'- -CGUCGa-----------CAGaCGCUGUGuuGCACCAG- -5'
9337 5' -53.3 NC_002512.2 + 132229 0.71 0.86899
Target:  5'- aGCAGCUc-CUGCGAgACGGCGaGGUUc -3'
miRNA:   3'- -CGUCGAcaGACGCUgUGUUGCaCCAG- -5'
9337 5' -53.3 NC_002512.2 + 215603 0.71 0.86151
Target:  5'- aCAGCgucguccggGUCUGCGGCA--GCGUGGcCg -3'
miRNA:   3'- cGUCGa--------CAGACGCUGUguUGCACCaG- -5'
9337 5' -53.3 NC_002512.2 + 201320 0.72 0.829603
Target:  5'- uCAGCUccGUCUgccGCGACGuCAGCGUGGcCg -3'
miRNA:   3'- cGUCGA--CAGA---CGCUGU-GUUGCACCaG- -5'
9337 5' -53.3 NC_002512.2 + 227631 0.72 0.821164
Target:  5'- gGCGGCgagGUCagGCGACGgAGCGcccgGGUCc -3'
miRNA:   3'- -CGUCGa--CAGa-CGCUGUgUUGCa---CCAG- -5'
9337 5' -53.3 NC_002512.2 + 218834 0.72 0.812554
Target:  5'- cGCGGCccUGcUCUGCGACuucgcCGACGaGGUCg -3'
miRNA:   3'- -CGUCG--AC-AGACGCUGu----GUUGCaCCAG- -5'
9337 5' -53.3 NC_002512.2 + 155510 0.74 0.748215
Target:  5'- -gAGCUG-CUGCGACgACGGCGUGcUCa -3'
miRNA:   3'- cgUCGACaGACGCUG-UGUUGCACcAG- -5'
9337 5' -53.3 NC_002512.2 + 209859 0.77 0.587467
Target:  5'- uCGGCUGcCUGCGGgACGccggcuacuACGUGGUCg -3'
miRNA:   3'- cGUCGACaGACGCUgUGU---------UGCACCAG- -5'
9337 5' -53.3 NC_002512.2 + 207611 0.79 0.479461
Target:  5'- gGCGGCUG-CUGCGGCGgcgaguuccuCGGCGUGGUg -3'
miRNA:   3'- -CGUCGACaGACGCUGU----------GUUGCACCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.