miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9338 3' -61.5 NC_002512.2 + 190081 0.66 0.758077
Target:  5'- cGGCCGgucaGCGGGCucgGCUGCGGGaccucaucCGGCGc -3'
miRNA:   3'- -CUGGCa---CGCCCG---CGACGUCUc-------GUCGU- -5'
9338 3' -61.5 NC_002512.2 + 153341 0.66 0.739659
Target:  5'- gGGCCGguccgggucgGCGGGUcccGCUggGCuGGGCGGCGg -3'
miRNA:   3'- -CUGGCa---------CGCCCG---CGA--CGuCUCGUCGU- -5'
9338 3' -61.5 NC_002512.2 + 170202 0.66 0.738729
Target:  5'- cGGCCaugaGCGGGUGCUccucGCGGugcgcgaAGCAGCGg -3'
miRNA:   3'- -CUGGca--CGCCCGCGA----CGUC-------UCGUCGU- -5'
9338 3' -61.5 NC_002512.2 + 227612 0.66 0.730319
Target:  5'- cGGCCGga-GGGCGg-GCGGcGGCGGCGa -3'
miRNA:   3'- -CUGGCacgCCCGCgaCGUC-UCGUCGU- -5'
9338 3' -61.5 NC_002512.2 + 91876 0.66 0.730319
Target:  5'- cGCCGUccggcGCGGGCG--GCGGcGCGGCGc -3'
miRNA:   3'- cUGGCA-----CGCCCGCgaCGUCuCGUCGU- -5'
9338 3' -61.5 NC_002512.2 + 153170 0.66 0.7209
Target:  5'- cGACCuacggggcgGCGGGCaGCgguggGgAGGGCGGCAc -3'
miRNA:   3'- -CUGGca-------CGCCCG-CGa----CgUCUCGUCGU- -5'
9338 3' -61.5 NC_002512.2 + 224144 0.66 0.711413
Target:  5'- cGCCGggagGCGGacGCGUgagGCGGGGCGGgGg -3'
miRNA:   3'- cUGGCa---CGCC--CGCGa--CGUCUCGUCgU- -5'
9338 3' -61.5 NC_002512.2 + 179298 0.66 0.710461
Target:  5'- cACCGUccaguccGCGGGCgGCgaggcggGCAGAuccuGCAGCGc -3'
miRNA:   3'- cUGGCA-------CGCCCG-CGa------CGUCU----CGUCGU- -5'
9338 3' -61.5 NC_002512.2 + 112279 0.67 0.682614
Target:  5'- cGCgGUGCaGGGCGUaauccacGCAGAGCuGCu -3'
miRNA:   3'- cUGgCACG-CCCGCGa------CGUCUCGuCGu -5'
9338 3' -61.5 NC_002512.2 + 192590 0.67 0.672929
Target:  5'- gGACCGUcccgcugcuGCGGcGCGCgcgGCGGgcgacGGCGGCc -3'
miRNA:   3'- -CUGGCA---------CGCC-CGCGa--CGUC-----UCGUCGu -5'
9338 3' -61.5 NC_002512.2 + 111623 0.67 0.672929
Target:  5'- cGGCCa-GCGaGGCGCUGUAGAcGUGGUg -3'
miRNA:   3'- -CUGGcaCGC-CCGCGACGUCU-CGUCGu -5'
9338 3' -61.5 NC_002512.2 + 175596 0.67 0.663213
Target:  5'- cGCCGUGCGGGUcCUucgGguGGGguGCc -3'
miRNA:   3'- cUGGCACGCCCGcGA---CguCUCguCGu -5'
9338 3' -61.5 NC_002512.2 + 184985 0.67 0.663213
Target:  5'- cGGCCGUcgacGUGGaGCGCUGCGGcccGguGCc -3'
miRNA:   3'- -CUGGCA----CGCC-CGCGACGUCu--CguCGu -5'
9338 3' -61.5 NC_002512.2 + 170373 0.68 0.633957
Target:  5'- gGGCCGUGCGcGGCGCcgcgcUGCAcuucuGGCAcaGCAg -3'
miRNA:   3'- -CUGGCACGC-CCGCG-----ACGUc----UCGU--CGU- -5'
9338 3' -61.5 NC_002512.2 + 103122 0.68 0.624193
Target:  5'- aGGCUGcGCGGGcCGCaGaAGAGCAGCc -3'
miRNA:   3'- -CUGGCaCGCCC-GCGaCgUCUCGUCGu -5'
9338 3' -61.5 NC_002512.2 + 132760 0.68 0.608585
Target:  5'- -cCCGcagGCGGGCGaaggucucccucgaaCaGCAGAGCAGCu -3'
miRNA:   3'- cuGGCa--CGCCCGC---------------GaCGUCUCGUCGu -5'
9338 3' -61.5 NC_002512.2 + 191058 0.68 0.604689
Target:  5'- gGACCGgucGCGccuGGCGCUgGCuGuGCGGCAa -3'
miRNA:   3'- -CUGGCa--CGC---CCGCGA-CGuCuCGUCGU- -5'
9338 3' -61.5 NC_002512.2 + 174488 0.68 0.594961
Target:  5'- cGGCaCGcucgGCGGGgCGCUGgGGuucuGCAGCAg -3'
miRNA:   3'- -CUG-GCa---CGCCC-GCGACgUCu---CGUCGU- -5'
9338 3' -61.5 NC_002512.2 + 157150 0.68 0.585258
Target:  5'- -cCCGggGCGGGCgGCggGCcGGGCGGCGu -3'
miRNA:   3'- cuGGCa-CGCCCG-CGa-CGuCUCGUCGU- -5'
9338 3' -61.5 NC_002512.2 + 218882 0.69 0.565951
Target:  5'- cGCCGUGCGcGcccucaucGCGCgccacGCGGGGCGGCu -3'
miRNA:   3'- cUGGCACGC-C--------CGCGa----CGUCUCGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.