miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9338 5' -56.5 NC_002512.2 + 211723 0.66 0.946203
Target:  5'- -aCGgGGAgCUGUGCCucggccuggCCCGCGa- -3'
miRNA:   3'- gaGUgCCUgGACAUGGua-------GGGCGCaa -5'
9338 5' -56.5 NC_002512.2 + 33196 0.66 0.946203
Target:  5'- gCUgGCGGACg-GUGCCgcucGUCCCGCc-- -3'
miRNA:   3'- -GAgUGCCUGgaCAUGG----UAGGGCGcaa -5'
9338 5' -56.5 NC_002512.2 + 94355 0.66 0.941833
Target:  5'- gCUCGUGGcGCCUGgcgGCCAUCCUcaggacguGCGUg -3'
miRNA:   3'- -GAGUGCC-UGGACa--UGGUAGGG--------CGCAa -5'
9338 5' -56.5 NC_002512.2 + 128897 0.66 0.937239
Target:  5'- --gACGGGCCUGgcgAUCcgCCCGCc-- -3'
miRNA:   3'- gagUGCCUGGACa--UGGuaGGGCGcaa -5'
9338 5' -56.5 NC_002512.2 + 134364 0.66 0.927374
Target:  5'- -aCACGGACCUG-ACgAUcugCCUGCGg- -3'
miRNA:   3'- gaGUGCCUGGACaUGgUA---GGGCGCaa -5'
9338 5' -56.5 NC_002512.2 + 155977 0.66 0.927374
Target:  5'- -gCACGG-CCUGUACgucCCCGCGc- -3'
miRNA:   3'- gaGUGCCuGGACAUGguaGGGCGCaa -5'
9338 5' -56.5 NC_002512.2 + 98247 0.67 0.910877
Target:  5'- gUCGCGGACCccGUACU-UCCCGUc-- -3'
miRNA:   3'- gAGUGCCUGGa-CAUGGuAGGGCGcaa -5'
9338 5' -56.5 NC_002512.2 + 133559 0.67 0.904322
Target:  5'- gCUCGCGacgcACCUGUcgugcggcgaccgGCCcgCCCGCGg- -3'
miRNA:   3'- -GAGUGCc---UGGACA-------------UGGuaGGGCGCaa -5'
9338 5' -56.5 NC_002512.2 + 120238 0.67 0.892368
Target:  5'- --gACGGGCCUGUcguggaggGCCuaCCCGCGg- -3'
miRNA:   3'- gagUGCCUGGACA--------UGGuaGGGCGCaa -5'
9338 5' -56.5 NC_002512.2 + 143437 0.67 0.892368
Target:  5'- -aCGCGGcACCcGUcccCCGUCCCGCGc- -3'
miRNA:   3'- gaGUGCC-UGGaCAu--GGUAGGGCGCaa -5'
9338 5' -56.5 NC_002512.2 + 99727 0.68 0.885761
Target:  5'- gUCGCGGGCCggcccgccGCCGggcCCCGCGg- -3'
miRNA:   3'- gAGUGCCUGGaca-----UGGUa--GGGCGCaa -5'
9338 5' -56.5 NC_002512.2 + 218466 0.68 0.864683
Target:  5'- -cCGCGGACCgcgGUcaucuccUCGUCCCGCGg- -3'
miRNA:   3'- gaGUGCCUGGa--CAu------GGUAGGGCGCaa -5'
9338 5' -56.5 NC_002512.2 + 96473 0.68 0.857253
Target:  5'- -gCGCGGACCgcgcgGCCGUCUCGCc-- -3'
miRNA:   3'- gaGUGCCUGGaca--UGGUAGGGCGcaa -5'
9338 5' -56.5 NC_002512.2 + 145460 0.69 0.822352
Target:  5'- cCUCAacgacaagaccgaGGACCUGUucgaccCCGUCCCGCa-- -3'
miRNA:   3'- -GAGUg------------CCUGGACAu-----GGUAGGGCGcaa -5'
9338 5' -56.5 NC_002512.2 + 180739 0.69 0.808842
Target:  5'- aUCugGuaGGCCUGUACCGcgUCCGCGa- -3'
miRNA:   3'- gAGugC--CUGGACAUGGUa-GGGCGCaa -5'
9338 5' -56.5 NC_002512.2 + 149157 0.71 0.736123
Target:  5'- -cCGCgGGGCCgGUGCCG-CCCGCGg- -3'
miRNA:   3'- gaGUG-CCUGGaCAUGGUaGGGCGCaa -5'
9338 5' -56.5 NC_002512.2 + 115085 0.71 0.707206
Target:  5'- -gCGCGGcGCCUG-GCCA-CCCGCGUg -3'
miRNA:   3'- gaGUGCC-UGGACaUGGUaGGGCGCAa -5'
9338 5' -56.5 NC_002512.2 + 173379 0.79 0.325461
Target:  5'- cCUCGCGGACCUGUuacgggACCGucgUCCUGCGg- -3'
miRNA:   3'- -GAGUGCCUGGACA------UGGU---AGGGCGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.