miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9339 3' -60.3 NC_002512.2 + 224705 0.66 0.839703
Target:  5'- cCCGcCCUGCUgGGGccGGCcGC-CGCCc -3'
miRNA:   3'- aGGC-GGACGAgUUCcuCCG-CGaGCGG- -5'
9339 3' -60.3 NC_002512.2 + 100866 0.66 0.839703
Target:  5'- gCCGCaCUGCaggUUGAGGAaGCGgaUGCCg -3'
miRNA:   3'- aGGCG-GACG---AGUUCCUcCGCgaGCGG- -5'
9339 3' -60.3 NC_002512.2 + 119086 0.66 0.839703
Target:  5'- aCCGgUcGCgCGAGGAGGUGCgggCgGCCu -3'
miRNA:   3'- aGGCgGaCGaGUUCCUCCGCGa--G-CGG- -5'
9339 3' -60.3 NC_002512.2 + 171851 0.66 0.839703
Target:  5'- gUCCgGCCgcgGCcggGAGGGGGCGgaaCGCCg -3'
miRNA:   3'- -AGG-CGGa--CGag-UUCCUCCGCga-GCGG- -5'
9339 3' -60.3 NC_002512.2 + 208404 0.66 0.839703
Target:  5'- cCCGCCUGCggaugCucuacGGGCGC-CGCUc -3'
miRNA:   3'- aGGCGGACGa----Guucc-UCCGCGaGCGG- -5'
9339 3' -60.3 NC_002512.2 + 219685 0.66 0.839703
Target:  5'- gCCGCCcgaGgaCGAGGAggagcgucGGCGCUCGg- -3'
miRNA:   3'- aGGCGGa--CgaGUUCCU--------CCGCGAGCgg -5'
9339 3' -60.3 NC_002512.2 + 202280 0.66 0.839703
Target:  5'- cUCCGCgCUGUgggaccGGGGCGCcgUGCCg -3'
miRNA:   3'- -AGGCG-GACGaguuc-CUCCGCGa-GCGG- -5'
9339 3' -60.3 NC_002512.2 + 128985 0.66 0.835029
Target:  5'- uUCCGCCUGCugcguuucuUCAacgcgcacuggggccGGGAGGaGUUCGaaCCg -3'
miRNA:   3'- -AGGCGGACG---------AGU---------------UCCUCCgCGAGC--GG- -5'
9339 3' -60.3 NC_002512.2 + 102679 0.66 0.831879
Target:  5'- gCCGCCcGCUgucCGGGGAGGaCGUg-GCUg -3'
miRNA:   3'- aGGCGGaCGA---GUUCCUCC-GCGagCGG- -5'
9339 3' -60.3 NC_002512.2 + 128668 0.66 0.831879
Target:  5'- cUCCuCCUGCUgcGGGAgacccuGGCGaaCGCCg -3'
miRNA:   3'- -AGGcGGACGAguUCCU------CCGCgaGCGG- -5'
9339 3' -60.3 NC_002512.2 + 132523 0.66 0.831879
Target:  5'- gCCGCCgcgguccccGCUCcgcGGGcGGCGC-CGUCg -3'
miRNA:   3'- aGGCGGa--------CGAGu--UCCuCCGCGaGCGG- -5'
9339 3' -60.3 NC_002512.2 + 221694 0.66 0.831879
Target:  5'- cCCGCCcgGCgacgCucGGccucGGGUGCUaCGCCg -3'
miRNA:   3'- aGGCGGa-CGa---GuuCC----UCCGCGA-GCGG- -5'
9339 3' -60.3 NC_002512.2 + 179476 0.66 0.823891
Target:  5'- uUCCugGUCUGCUUc-GGcGGCGUcgUCGCCa -3'
miRNA:   3'- -AGG--CGGACGAGuuCCuCCGCG--AGCGG- -5'
9339 3' -60.3 NC_002512.2 + 129192 0.66 0.823891
Target:  5'- -aCG-CUGCg-GAGGAGGCcGC-CGCCg -3'
miRNA:   3'- agGCgGACGagUUCCUCCG-CGaGCGG- -5'
9339 3' -60.3 NC_002512.2 + 191203 0.66 0.823891
Target:  5'- cUCCGUCgGCUCGGucuuccccGGGGGCGUccccgGCCu -3'
miRNA:   3'- -AGGCGGaCGAGUU--------CCUCCGCGag---CGG- -5'
9339 3' -60.3 NC_002512.2 + 213036 0.66 0.823891
Target:  5'- gUCCGCCgGCUgCGGGGGauCGagaUCGCCc -3'
miRNA:   3'- -AGGCGGaCGA-GUUCCUccGCg--AGCGG- -5'
9339 3' -60.3 NC_002512.2 + 187310 0.66 0.823891
Target:  5'- cCCGCC-GCUCGccucGcGGCGCcCGCCc -3'
miRNA:   3'- aGGCGGaCGAGUuc--CuCCGCGaGCGG- -5'
9339 3' -60.3 NC_002512.2 + 226838 0.66 0.823891
Target:  5'- gUCCGCC-GCcgUCAAGGcGGaGCagGCCg -3'
miRNA:   3'- -AGGCGGaCG--AGUUCCuCCgCGagCGG- -5'
9339 3' -60.3 NC_002512.2 + 189502 0.66 0.815746
Target:  5'- aCCGCCagguggagacGCUCcGGGcccGG-GCUCGCCg -3'
miRNA:   3'- aGGCGGa---------CGAGuUCCu--CCgCGAGCGG- -5'
9339 3' -60.3 NC_002512.2 + 124957 0.66 0.815746
Target:  5'- -aCGCC-GgaCGAGGAGGCcGUcgcggacuUCGCCa -3'
miRNA:   3'- agGCGGaCgaGUUCCUCCG-CG--------AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.