miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9339 5' -55.1 NC_002512.2 + 176431 0.66 0.980046
Target:  5'- aGGGUGGccAUCUGCgccgCGgucGGggUGUCg -3'
miRNA:   3'- gCCCGCCa-UGGACGa---GC---UCuuACAGg -5'
9339 5' -55.1 NC_002512.2 + 208562 0.66 0.979406
Target:  5'- aGGGCGGUGCgucagGC-CGAGucgacgcgcagcggGUCCg -3'
miRNA:   3'- gCCCGCCAUGga---CGaGCUCuua-----------CAGG- -5'
9339 5' -55.1 NC_002512.2 + 39338 0.66 0.977854
Target:  5'- aCGcGGCGGUACgCgugGcCUCaGGAGaGUCCg -3'
miRNA:   3'- -GC-CCGCCAUG-Ga--C-GAGcUCUUaCAGG- -5'
9339 5' -55.1 NC_002512.2 + 207931 0.66 0.972944
Target:  5'- aCGGGCccGGUGg-UGCUCGGGuccGUCCu -3'
miRNA:   3'- -GCCCG--CCAUggACGAGCUCuuaCAGG- -5'
9339 5' -55.1 NC_002512.2 + 128864 0.66 0.972944
Target:  5'- gCGGGCccuGGUgcugcGCCUGCUgagggaCGAGAcgGgCCu -3'
miRNA:   3'- -GCCCG---CCA-----UGGACGA------GCUCUuaCaGG- -5'
9339 5' -55.1 NC_002512.2 + 217632 0.66 0.972679
Target:  5'- aCGGGUcucgugcugaugcGGaugGCCUGCUgGaAGAAcGUCCu -3'
miRNA:   3'- -GCCCG-------------CCa--UGGACGAgC-UCUUaCAGG- -5'
9339 5' -55.1 NC_002512.2 + 171828 0.66 0.970214
Target:  5'- cCGGcaucCGGUACCg---CGGGAcgGUCCg -3'
miRNA:   3'- -GCCc---GCCAUGGacgaGCUCUuaCAGG- -5'
9339 5' -55.1 NC_002512.2 + 206210 0.67 0.964173
Target:  5'- aGcGGCGGUGCUgggGCUUGaAGuaccgcagGUCCa -3'
miRNA:   3'- gC-CCGCCAUGGa--CGAGC-UCuua-----CAGG- -5'
9339 5' -55.1 NC_002512.2 + 109027 0.67 0.964173
Target:  5'- gCGGGCGGggacgaggACCggggggGCUCGGGGGacgaCCg -3'
miRNA:   3'- -GCCCGCCa-------UGGa-----CGAGCUCUUaca-GG- -5'
9339 5' -55.1 NC_002512.2 + 164614 0.67 0.964173
Target:  5'- aGGGCGuUGCaggauCUCGAGGA-GUCCg -3'
miRNA:   3'- gCCCGCcAUGgac--GAGCUCUUaCAGG- -5'
9339 5' -55.1 NC_002512.2 + 196659 0.67 0.964173
Target:  5'- gGGGcCGGUACgUGUgcuguugCGAGGA-GUUCg -3'
miRNA:   3'- gCCC-GCCAUGgACGa------GCUCUUaCAGG- -5'
9339 5' -55.1 NC_002512.2 + 221402 0.67 0.949629
Target:  5'- gCGGGCGGggag-GCggCGGGucUGUCCg -3'
miRNA:   3'- -GCCCGCCauggaCGa-GCUCuuACAGG- -5'
9339 5' -55.1 NC_002512.2 + 121830 0.68 0.945456
Target:  5'- gGGGCGGgugACCUGacgaUCGcg---GUCCg -3'
miRNA:   3'- gCCCGCCa--UGGACg---AGCucuuaCAGG- -5'
9339 5' -55.1 NC_002512.2 + 163653 0.68 0.945456
Target:  5'- aCGGGCGGcccgucaccGCCaGCUggcCGGGGAcGUCCu -3'
miRNA:   3'- -GCCCGCCa--------UGGaCGA---GCUCUUaCAGG- -5'
9339 5' -55.1 NC_002512.2 + 213010 0.68 0.941063
Target:  5'- uCGGGCccgGGgcCCU-CUCGAGGugcGUCCg -3'
miRNA:   3'- -GCCCG---CCauGGAcGAGCUCUua-CAGG- -5'
9339 5' -55.1 NC_002512.2 + 91261 0.68 0.931607
Target:  5'- gGGGUGGUcccCCUGUUCGcGAAUGa-- -3'
miRNA:   3'- gCCCGCCAu--GGACGAGCuCUUACagg -5'
9339 5' -55.1 NC_002512.2 + 194663 0.68 0.931607
Target:  5'- uCGGGCGGU-CCUGCacgcccacgUCGAccugGUCUa -3'
miRNA:   3'- -GCCCGCCAuGGACG---------AGCUcuuaCAGG- -5'
9339 5' -55.1 NC_002512.2 + 189208 0.68 0.921253
Target:  5'- gCGGGCGGca--UGCUCGAcgucGGAUccGUCCg -3'
miRNA:   3'- -GCCCGCCauggACGAGCU----CUUA--CAGG- -5'
9339 5' -55.1 NC_002512.2 + 113728 0.69 0.915738
Target:  5'- gCGGGCGGcgAUCUGCgggcCGAGGugcgcgGUCa -3'
miRNA:   3'- -GCCCGCCa-UGGACGa---GCUCUua----CAGg -5'
9339 5' -55.1 NC_002512.2 + 77788 0.69 0.915738
Target:  5'- uCGGGCGGacgguuCCU--UCGAGugcGUGUCCg -3'
miRNA:   3'- -GCCCGCCau----GGAcgAGCUCu--UACAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.