miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9339 5' -55.1 NC_002512.2 + 39338 0.66 0.977854
Target:  5'- aCGcGGCGGUACgCgugGcCUCaGGAGaGUCCg -3'
miRNA:   3'- -GC-CCGCCAUG-Ga--C-GAGcUCUUaCAGG- -5'
9339 5' -55.1 NC_002512.2 + 77788 0.69 0.915738
Target:  5'- uCGGGCGGacgguuCCU--UCGAGugcGUGUCCg -3'
miRNA:   3'- -GCCCGCCau----GGAcgAGCUCu--UACAGG- -5'
9339 5' -55.1 NC_002512.2 + 91261 0.68 0.931607
Target:  5'- gGGGUGGUcccCCUGUUCGcGAAUGa-- -3'
miRNA:   3'- gCCCGCCAu--GGACGAGCuCUUACagg -5'
9339 5' -55.1 NC_002512.2 + 100815 0.71 0.824776
Target:  5'- gGGGUcg-ACCUGgaCGAGGAUGUUCa -3'
miRNA:   3'- gCCCGccaUGGACgaGCUCUUACAGG- -5'
9339 5' -55.1 NC_002512.2 + 101113 0.69 0.897858
Target:  5'- aGGGUGaGcagcGCCUcgUCGAGggUGUCCu -3'
miRNA:   3'- gCCCGC-Ca---UGGAcgAGCUCuuACAGG- -5'
9339 5' -55.1 NC_002512.2 + 109027 0.67 0.964173
Target:  5'- gCGGGCGGggacgaggACCggggggGCUCGGGGGacgaCCg -3'
miRNA:   3'- -GCCCGCCa-------UGGa-----CGAGCUCUUaca-GG- -5'
9339 5' -55.1 NC_002512.2 + 113728 0.69 0.915738
Target:  5'- gCGGGCGGcgAUCUGCgggcCGAGGugcgcgGUCa -3'
miRNA:   3'- -GCCCGCCa-UGGACGa---GCUCUua----CAGg -5'
9339 5' -55.1 NC_002512.2 + 121830 0.68 0.945456
Target:  5'- gGGGCGGgugACCUGacgaUCGcg---GUCCg -3'
miRNA:   3'- gCCCGCCa--UGGACg---AGCucuuaCAGG- -5'
9339 5' -55.1 NC_002512.2 + 128864 0.66 0.972944
Target:  5'- gCGGGCccuGGUgcugcGCCUGCUgagggaCGAGAcgGgCCu -3'
miRNA:   3'- -GCCCG---CCA-----UGGACGA------GCUCUuaCaGG- -5'
9339 5' -55.1 NC_002512.2 + 155790 0.73 0.725898
Target:  5'- cCGGGCagcucGUGcCCUGcCUCGAGGaggccGUGUCCg -3'
miRNA:   3'- -GCCCGc----CAU-GGAC-GAGCUCU-----UACAGG- -5'
9339 5' -55.1 NC_002512.2 + 163653 0.68 0.945456
Target:  5'- aCGGGCGGcccgucaccGCCaGCUggcCGGGGAcGUCCu -3'
miRNA:   3'- -GCCCGCCa--------UGGaCGA---GCUCUUaCAGG- -5'
9339 5' -55.1 NC_002512.2 + 164614 0.67 0.964173
Target:  5'- aGGGCGuUGCaggauCUCGAGGA-GUCCg -3'
miRNA:   3'- gCCCGCcAUGgac--GAGCUCUUaCAGG- -5'
9339 5' -55.1 NC_002512.2 + 171828 0.66 0.970214
Target:  5'- cCGGcaucCGGUACCg---CGGGAcgGUCCg -3'
miRNA:   3'- -GCCc---GCCAUGGacgaGCUCUuaCAGG- -5'
9339 5' -55.1 NC_002512.2 + 176431 0.66 0.980046
Target:  5'- aGGGUGGccAUCUGCgccgCGgucGGggUGUCg -3'
miRNA:   3'- gCCCGCCa-UGGACGa---GC---UCuuACAGg -5'
9339 5' -55.1 NC_002512.2 + 181595 0.7 0.880778
Target:  5'- gGGGCGGcGgguccgcgacguccuCCUGCUCGGGGgggaaccgAUGUCg -3'
miRNA:   3'- gCCCGCCaU---------------GGACGAGCUCU--------UACAGg -5'
9339 5' -55.1 NC_002512.2 + 189208 0.68 0.921253
Target:  5'- gCGGGCGGca--UGCUCGAcgucGGAUccGUCCg -3'
miRNA:   3'- -GCCCGCCauggACGAGCU----CUUA--CAGG- -5'
9339 5' -55.1 NC_002512.2 + 194663 0.68 0.931607
Target:  5'- uCGGGCGGU-CCUGCacgcccacgUCGAccugGUCUa -3'
miRNA:   3'- -GCCCGCCAuGGACG---------AGCUcuuaCAGG- -5'
9339 5' -55.1 NC_002512.2 + 195614 0.74 0.667374
Target:  5'- gGGGCGGccACCUGCUgGAGAcgGg-- -3'
miRNA:   3'- gCCCGCCa-UGGACGAgCUCUuaCagg -5'
9339 5' -55.1 NC_002512.2 + 196422 0.7 0.870994
Target:  5'- gGGGCGGcgGCCgGgUCGGGAGagGUCg -3'
miRNA:   3'- gCCCGCCa-UGGaCgAGCUCUUa-CAGg -5'
9339 5' -55.1 NC_002512.2 + 196659 0.67 0.964173
Target:  5'- gGGGcCGGUACgUGUgcuguugCGAGGA-GUUCg -3'
miRNA:   3'- gCCC-GCCAUGgACGa------GCUCUUaCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.