miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9340 3' -55.7 NC_002512.2 + 215247 0.66 0.966413
Target:  5'- cCCACagcuaCGCCGCCU---UCCUCAa -3'
miRNA:   3'- cGGUGgaa--GCGGCGGAaguAGGAGUc -5'
9340 3' -55.7 NC_002512.2 + 169082 0.66 0.966413
Target:  5'- gGCgGCg-UCGCgGCCcgCGUCCUCGu -3'
miRNA:   3'- -CGgUGgaAGCGgCGGaaGUAGGAGUc -5'
9340 3' -55.7 NC_002512.2 + 100029 0.66 0.966413
Target:  5'- cGCCGCCgUCcuCCGCCU-CcgCCUCc- -3'
miRNA:   3'- -CGGUGGaAGc-GGCGGAaGuaGGAGuc -5'
9340 3' -55.7 NC_002512.2 + 212000 0.66 0.966413
Target:  5'- gGCCGCC---GCCGCCUaucaCGUCCccCGGg -3'
miRNA:   3'- -CGGUGGaagCGGCGGAa---GUAGGa-GUC- -5'
9340 3' -55.7 NC_002512.2 + 108079 0.66 0.966413
Target:  5'- gGCgAUCgucgUCGUCGUCgUCGUCUUCGGc -3'
miRNA:   3'- -CGgUGGa---AGCGGCGGaAGUAGGAGUC- -5'
9340 3' -55.7 NC_002512.2 + 147335 0.66 0.963218
Target:  5'- -gCACCUgagCGCa-CCUUCGUCC-CGGa -3'
miRNA:   3'- cgGUGGAa--GCGgcGGAAGUAGGaGUC- -5'
9340 3' -55.7 NC_002512.2 + 3141 0.66 0.963218
Target:  5'- cGCaCGCCUcCGCCGUCUcCGggacagCCUCGc -3'
miRNA:   3'- -CG-GUGGAaGCGGCGGAaGUa-----GGAGUc -5'
9340 3' -55.7 NC_002512.2 + 75917 0.66 0.963218
Target:  5'- cGCCGCCggCGCCGCCggaccCCg--- -3'
miRNA:   3'- -CGGUGGaaGCGGCGGaaguaGGaguc -5'
9340 3' -55.7 NC_002512.2 + 128351 0.66 0.963218
Target:  5'- cGCCGCCgcCGUCuCCUUCccCCUCGc -3'
miRNA:   3'- -CGGUGGaaGCGGcGGAAGuaGGAGUc -5'
9340 3' -55.7 NC_002512.2 + 107879 0.66 0.95731
Target:  5'- cGCCGCCUccggccccuccgggCGCCgauaaagGCUUgccCGUCCUCGGa -3'
miRNA:   3'- -CGGUGGAa-------------GCGG-------CGGAa--GUAGGAGUC- -5'
9340 3' -55.7 NC_002512.2 + 176436 0.66 0.956204
Target:  5'- gGCCAUCUgCGCCGCggUCGgggUgUCGGg -3'
miRNA:   3'- -CGGUGGAaGCGGCGgaAGUa--GgAGUC- -5'
9340 3' -55.7 NC_002512.2 + 211895 0.66 0.956204
Target:  5'- gGUCACCUUCcgggGCUGCCgcgUCGUCgagcgUCGGg -3'
miRNA:   3'- -CGGUGGAAG----CGGCGGa--AGUAGg----AGUC- -5'
9340 3' -55.7 NC_002512.2 + 227092 0.66 0.956204
Target:  5'- cCCGCCggcCGCCgGCCgggUCGggCUCAGa -3'
miRNA:   3'- cGGUGGaa-GCGG-CGGa--AGUagGAGUC- -5'
9340 3' -55.7 NC_002512.2 + 156945 0.66 0.953934
Target:  5'- cGCCACCcugguggcccggccgUUCGCCGaCgucggCAUCCUgGGc -3'
miRNA:   3'- -CGGUGG---------------AAGCGGCgGaa---GUAGGAgUC- -5'
9340 3' -55.7 NC_002512.2 + 225309 0.66 0.952377
Target:  5'- cGCCGCCUccucCGCCGCCc-CAgacgCCgCAGc -3'
miRNA:   3'- -CGGUGGAa---GCGGCGGaaGUa---GGaGUC- -5'
9340 3' -55.7 NC_002512.2 + 224725 0.66 0.952377
Target:  5'- cGCCGCCccggucgCGCCGCUgccguucuaUCAUCgaCAGa -3'
miRNA:   3'- -CGGUGGaa-----GCGGCGGa--------AGUAGgaGUC- -5'
9340 3' -55.7 NC_002512.2 + 179481 0.66 0.952377
Target:  5'- gGUCugCUucggcggcgUCGUCGCCaUCGUCgUCGGc -3'
miRNA:   3'- -CGGugGA---------AGCGGCGGaAGUAGgAGUC- -5'
9340 3' -55.7 NC_002512.2 + 165746 0.66 0.952377
Target:  5'- uUCACCUUCGCCGagaaacaccUCUUCA-CCaUCGGc -3'
miRNA:   3'- cGGUGGAAGCGGC---------GGAAGUaGG-AGUC- -5'
9340 3' -55.7 NC_002512.2 + 140463 0.66 0.948331
Target:  5'- cGCCACCUcuccgucaCGCCGCCUcgCGaCCgUAGg -3'
miRNA:   3'- -CGGUGGAa-------GCGGCGGAa-GUaGGaGUC- -5'
9340 3' -55.7 NC_002512.2 + 94349 0.66 0.948331
Target:  5'- aGCCcaGCUcgUGgCGCCUggcggcCAUCCUCAGg -3'
miRNA:   3'- -CGG--UGGaaGCgGCGGAa-----GUAGGAGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.