Results 1 - 20 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9340 | 5' | -61 | NC_002512.2 | + | 200641 | 0.66 | 0.874725 |
Target: 5'- uCCCCGuCGGagGAcggacugcgcgacccGcgGCCGGCGuUCGGg -3' miRNA: 3'- -GGGGC-GCCagCU---------------Ca-UGGCCGCcAGCC- -5' |
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9340 | 5' | -61 | NC_002512.2 | + | 137232 | 0.66 | 0.872064 |
Target: 5'- cUCCC-CGGUcccgaCGAGgacACCGGCGG-CGa -3' miRNA: 3'- -GGGGcGCCA-----GCUCa--UGGCCGCCaGCc -5' |
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9340 | 5' | -61 | NC_002512.2 | + | 96187 | 0.66 | 0.872064 |
Target: 5'- gUCCgGUGGUCcggGAGgcgGCCGcGaGGUCGGc -3' miRNA: 3'- -GGGgCGCCAG---CUCa--UGGC-CgCCAGCC- -5' |
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9340 | 5' | -61 | NC_002512.2 | + | 82366 | 0.66 | 0.872064 |
Target: 5'- gCCUCGCGc-CGGG-AUCGGCGGgaCGGg -3' miRNA: 3'- -GGGGCGCcaGCUCaUGGCCGCCa-GCC- -5' |
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9340 | 5' | -61 | NC_002512.2 | + | 95619 | 0.66 | 0.865285 |
Target: 5'- cCCCgCGCGGaCGAcgaagGCCagggGGCGGcUCGGc -3' miRNA: 3'- -GGG-GCGCCaGCUca---UGG----CCGCC-AGCC- -5' |
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9340 | 5' | -61 | NC_002512.2 | + | 225384 | 0.66 | 0.865285 |
Target: 5'- cCCUCGCGuccauccucuUCGGGgacggcGCCGG-GGUCGGg -3' miRNA: 3'- -GGGGCGCc---------AGCUCa-----UGGCCgCCAGCC- -5' |
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9340 | 5' | -61 | NC_002512.2 | + | 107215 | 0.66 | 0.865285 |
Target: 5'- -gCCGCGGcCGGGgaGCCG-CGGUCa- -3' miRNA: 3'- ggGGCGCCaGCUCa-UGGCcGCCAGcc -5' |
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9340 | 5' | -61 | NC_002512.2 | + | 221841 | 0.66 | 0.863908 |
Target: 5'- aCCCGCGGgggcgccUCGGG-ACCGGgaccucuCGGagCGGg -3' miRNA: 3'- gGGGCGCC-------AGCUCaUGGCC-------GCCa-GCC- -5' |
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9340 | 5' | -61 | NC_002512.2 | + | 198542 | 0.66 | 0.863217 |
Target: 5'- gCUCGUGGUCGua-GCCGGCcagggcgcuguccaGGUCGu -3' miRNA: 3'- gGGGCGCCAGCucaUGGCCG--------------CCAGCc -5' |
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9340 | 5' | -61 | NC_002512.2 | + | 101400 | 0.66 | 0.863217 |
Target: 5'- gCUCGUGGUggugcuccgcuucCGAGggcacagcggcgGCCGGCGGcgCGGc -3' miRNA: 3'- gGGGCGCCA-------------GCUCa-----------UGGCCGCCa-GCC- -5' |
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9340 | 5' | -61 | NC_002512.2 | + | 191600 | 0.66 | 0.858331 |
Target: 5'- gUCgCGCGGUCGAGUcCuCGGC-GUCu- -3' miRNA: 3'- -GGgGCGCCAGCUCAuG-GCCGcCAGcc -5' |
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9340 | 5' | -61 | NC_002512.2 | + | 106446 | 0.66 | 0.858331 |
Target: 5'- aCCaGCGGUCG-GUccgacugcgcACgGGCGG-CGGg -3' miRNA: 3'- gGGgCGCCAGCuCA----------UGgCCGCCaGCC- -5' |
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9340 | 5' | -61 | NC_002512.2 | + | 113050 | 0.66 | 0.858331 |
Target: 5'- cUCCCGauGUcggagccgcaCGAGgGCCaGGCGGUCGa -3' miRNA: 3'- -GGGGCgcCA----------GCUCaUGG-CCGCCAGCc -5' |
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9340 | 5' | -61 | NC_002512.2 | + | 90095 | 0.66 | 0.851206 |
Target: 5'- cCCCCGcCGGccuggaGGGUgcGCCGGaCGauGUCGGa -3' miRNA: 3'- -GGGGC-GCCag----CUCA--UGGCC-GC--CAGCC- -5' |
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9340 | 5' | -61 | NC_002512.2 | + | 217818 | 0.66 | 0.851206 |
Target: 5'- gUCCCGaucGUCGAcgGCgGGCGGUuCGGc -3' miRNA: 3'- -GGGGCgc-CAGCUcaUGgCCGCCA-GCC- -5' |
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9340 | 5' | -61 | NC_002512.2 | + | 177869 | 0.66 | 0.851206 |
Target: 5'- uCCUCGCGGaUCGucga-CGGCGGUaGGu -3' miRNA: 3'- -GGGGCGCC-AGCucaugGCCGCCAgCC- -5' |
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9340 | 5' | -61 | NC_002512.2 | + | 133419 | 0.66 | 0.851206 |
Target: 5'- gCCCCGCGGaCGAaaaacCCGgacGCGGaCGGg -3' miRNA: 3'- -GGGGCGCCaGCUcau--GGC---CGCCaGCC- -5' |
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9340 | 5' | -61 | NC_002512.2 | + | 181681 | 0.66 | 0.843915 |
Target: 5'- gCCCCGCGGcCGGGauCCcGCgGGUCa- -3' miRNA: 3'- -GGGGCGCCaGCUCauGGcCG-CCAGcc -5' |
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9340 | 5' | -61 | NC_002512.2 | + | 107630 | 0.66 | 0.843915 |
Target: 5'- uCCCCGCGGccgcCGGGgaagACCGaGCuguaGGUCa- -3' miRNA: 3'- -GGGGCGCCa---GCUCa---UGGC-CG----CCAGcc -5' |
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9340 | 5' | -61 | NC_002512.2 | + | 95147 | 0.66 | 0.843915 |
Target: 5'- gCCCCgGCgGGUCGAGgACCGGagccuuccccaCGGcccccaggaugUCGGg -3' miRNA: 3'- -GGGG-CG-CCAGCUCaUGGCC-----------GCC-----------AGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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