miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9340 5' -61 NC_002512.2 + 200641 0.66 0.874725
Target:  5'- uCCCCGuCGGagGAcggacugcgcgacccGcgGCCGGCGuUCGGg -3'
miRNA:   3'- -GGGGC-GCCagCU---------------Ca-UGGCCGCcAGCC- -5'
9340 5' -61 NC_002512.2 + 137232 0.66 0.872064
Target:  5'- cUCCC-CGGUcccgaCGAGgacACCGGCGG-CGa -3'
miRNA:   3'- -GGGGcGCCA-----GCUCa--UGGCCGCCaGCc -5'
9340 5' -61 NC_002512.2 + 96187 0.66 0.872064
Target:  5'- gUCCgGUGGUCcggGAGgcgGCCGcGaGGUCGGc -3'
miRNA:   3'- -GGGgCGCCAG---CUCa--UGGC-CgCCAGCC- -5'
9340 5' -61 NC_002512.2 + 82366 0.66 0.872064
Target:  5'- gCCUCGCGc-CGGG-AUCGGCGGgaCGGg -3'
miRNA:   3'- -GGGGCGCcaGCUCaUGGCCGCCa-GCC- -5'
9340 5' -61 NC_002512.2 + 107215 0.66 0.865285
Target:  5'- -gCCGCGGcCGGGgaGCCG-CGGUCa- -3'
miRNA:   3'- ggGGCGCCaGCUCa-UGGCcGCCAGcc -5'
9340 5' -61 NC_002512.2 + 225384 0.66 0.865285
Target:  5'- cCCUCGCGuccauccucuUCGGGgacggcGCCGG-GGUCGGg -3'
miRNA:   3'- -GGGGCGCc---------AGCUCa-----UGGCCgCCAGCC- -5'
9340 5' -61 NC_002512.2 + 95619 0.66 0.865285
Target:  5'- cCCCgCGCGGaCGAcgaagGCCagggGGCGGcUCGGc -3'
miRNA:   3'- -GGG-GCGCCaGCUca---UGG----CCGCC-AGCC- -5'
9340 5' -61 NC_002512.2 + 221841 0.66 0.863908
Target:  5'- aCCCGCGGgggcgccUCGGG-ACCGGgaccucuCGGagCGGg -3'
miRNA:   3'- gGGGCGCC-------AGCUCaUGGCC-------GCCa-GCC- -5'
9340 5' -61 NC_002512.2 + 198542 0.66 0.863217
Target:  5'- gCUCGUGGUCGua-GCCGGCcagggcgcuguccaGGUCGu -3'
miRNA:   3'- gGGGCGCCAGCucaUGGCCG--------------CCAGCc -5'
9340 5' -61 NC_002512.2 + 101400 0.66 0.863217
Target:  5'- gCUCGUGGUggugcuccgcuucCGAGggcacagcggcgGCCGGCGGcgCGGc -3'
miRNA:   3'- gGGGCGCCA-------------GCUCa-----------UGGCCGCCa-GCC- -5'
9340 5' -61 NC_002512.2 + 106446 0.66 0.858331
Target:  5'- aCCaGCGGUCG-GUccgacugcgcACgGGCGG-CGGg -3'
miRNA:   3'- gGGgCGCCAGCuCA----------UGgCCGCCaGCC- -5'
9340 5' -61 NC_002512.2 + 113050 0.66 0.858331
Target:  5'- cUCCCGauGUcggagccgcaCGAGgGCCaGGCGGUCGa -3'
miRNA:   3'- -GGGGCgcCA----------GCUCaUGG-CCGCCAGCc -5'
9340 5' -61 NC_002512.2 + 191600 0.66 0.858331
Target:  5'- gUCgCGCGGUCGAGUcCuCGGC-GUCu- -3'
miRNA:   3'- -GGgGCGCCAGCUCAuG-GCCGcCAGcc -5'
9340 5' -61 NC_002512.2 + 90095 0.66 0.851206
Target:  5'- cCCCCGcCGGccuggaGGGUgcGCCGGaCGauGUCGGa -3'
miRNA:   3'- -GGGGC-GCCag----CUCA--UGGCC-GC--CAGCC- -5'
9340 5' -61 NC_002512.2 + 217818 0.66 0.851206
Target:  5'- gUCCCGaucGUCGAcgGCgGGCGGUuCGGc -3'
miRNA:   3'- -GGGGCgc-CAGCUcaUGgCCGCCA-GCC- -5'
9340 5' -61 NC_002512.2 + 177869 0.66 0.851206
Target:  5'- uCCUCGCGGaUCGucga-CGGCGGUaGGu -3'
miRNA:   3'- -GGGGCGCC-AGCucaugGCCGCCAgCC- -5'
9340 5' -61 NC_002512.2 + 133419 0.66 0.851206
Target:  5'- gCCCCGCGGaCGAaaaacCCGgacGCGGaCGGg -3'
miRNA:   3'- -GGGGCGCCaGCUcau--GGC---CGCCaGCC- -5'
9340 5' -61 NC_002512.2 + 107630 0.66 0.843915
Target:  5'- uCCCCGCGGccgcCGGGgaagACCGaGCuguaGGUCa- -3'
miRNA:   3'- -GGGGCGCCa---GCUCa---UGGC-CG----CCAGcc -5'
9340 5' -61 NC_002512.2 + 95147 0.66 0.843915
Target:  5'- gCCCCgGCgGGUCGAGgACCGGagccuuccccaCGGcccccaggaugUCGGg -3'
miRNA:   3'- -GGGG-CG-CCAGCUCaUGGCC-----------GCC-----------AGCC- -5'
9340 5' -61 NC_002512.2 + 223307 0.66 0.843915
Target:  5'- -gCCGcCGGUCGAc-ACCGugaaCGGUCGGg -3'
miRNA:   3'- ggGGC-GCCAGCUcaUGGCc---GCCAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.