miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9341 3' -57.3 NC_002512.2 + 110603 0.65 0.94711
Target:  5'- uCGCCGGUguagaaguccuggGCGGCgcagaccaugGGGUCgccGGGAuCCa -3'
miRNA:   3'- cGCGGCCAa------------CGCCG----------CCUAG---UCCUuGG- -5'
9341 3' -57.3 NC_002512.2 + 167419 0.66 0.946279
Target:  5'- gGCGUCGaucucgUGCGGCGGcacgccugcgcguucGUCcGGAGCa -3'
miRNA:   3'- -CGCGGCca----ACGCCGCC---------------UAGuCCUUGg -5'
9341 3' -57.3 NC_002512.2 + 191073 0.66 0.944593
Target:  5'- gGCGCUGGcugUGCGGCaaguggggguGGAUggUGGGuugcuGCCg -3'
miRNA:   3'- -CGCGGCCa--ACGCCG----------CCUA--GUCCu----UGG- -5'
9341 3' -57.3 NC_002512.2 + 168146 0.66 0.944593
Target:  5'- gGgGCUGGggguggGgGGCGGAgaGGGGACg -3'
miRNA:   3'- -CgCGGCCaa----CgCCGCCUagUCCUUGg -5'
9341 3' -57.3 NC_002512.2 + 96222 0.66 0.944593
Target:  5'- aCGgCGGccGCGGCGGcggCGGcGACCg -3'
miRNA:   3'- cGCgGCCaaCGCCGCCua-GUCcUUGG- -5'
9341 3' -57.3 NC_002512.2 + 107209 0.66 0.940229
Target:  5'- -aGCCGGgccGCGGCcG---GGGAGCCg -3'
miRNA:   3'- cgCGGCCaa-CGCCGcCuagUCCUUGG- -5'
9341 3' -57.3 NC_002512.2 + 111175 0.66 0.940229
Target:  5'- uCGCCGGcgaGCGGCaGG-CGGGGgaaGCCc -3'
miRNA:   3'- cGCGGCCaa-CGCCGcCUaGUCCU---UGG- -5'
9341 3' -57.3 NC_002512.2 + 187677 0.66 0.940229
Target:  5'- ---aCGGcgGCgGGCGGAggcacCGGGAACCc -3'
miRNA:   3'- cgcgGCCaaCG-CCGCCUa----GUCCUUGG- -5'
9341 3' -57.3 NC_002512.2 + 205388 0.66 0.940229
Target:  5'- -gGCCcaGGaagGCGGCGGcgCAgcGGAACUc -3'
miRNA:   3'- cgCGG--CCaa-CGCCGCCuaGU--CCUUGG- -5'
9341 3' -57.3 NC_002512.2 + 209293 0.66 0.940229
Target:  5'- aGCGCUGcGUcaaggagaaCGGCGGcGUCAGGGucgACCu -3'
miRNA:   3'- -CGCGGC-CAac-------GCCGCC-UAGUCCU---UGG- -5'
9341 3' -57.3 NC_002512.2 + 106515 0.66 0.940229
Target:  5'- cGCGCgGGUUgacgaucucGCGGCcccggaccuuGGA-CGGGGGCUc -3'
miRNA:   3'- -CGCGgCCAA---------CGCCG----------CCUaGUCCUUGG- -5'
9341 3' -57.3 NC_002512.2 + 115593 0.66 0.938877
Target:  5'- uGCGCCGGgugUacaagaacacggacGCGGCGGAcccgCuGGAGa- -3'
miRNA:   3'- -CGCGGCCa--A--------------CGCCGCCUa---GuCCUUgg -5'
9341 3' -57.3 NC_002512.2 + 95577 0.66 0.938877
Target:  5'- gGCGCCGGcccCGGCGacguccucgaagacGAUCcuccGGGACCc -3'
miRNA:   3'- -CGCGGCCaacGCCGC--------------CUAGu---CCUUGG- -5'
9341 3' -57.3 NC_002512.2 + 113743 0.66 0.935648
Target:  5'- cGgGCCGaGgUGC-GCGG-UCAuGGAGCCg -3'
miRNA:   3'- -CgCGGC-CaACGcCGCCuAGU-CCUUGG- -5'
9341 3' -57.3 NC_002512.2 + 219482 0.66 0.935648
Target:  5'- cGUGCCcc-UGgGGCGGGUCagacgAGGAugCu -3'
miRNA:   3'- -CGCGGccaACgCCGCCUAG-----UCCUugG- -5'
9341 3' -57.3 NC_002512.2 + 210425 0.66 0.935648
Target:  5'- gGCGagguCCGGgaUGUGGCG--UCGGGGACUg -3'
miRNA:   3'- -CGC----GGCCa-ACGCCGCcuAGUCCUUGG- -5'
9341 3' -57.3 NC_002512.2 + 222405 0.66 0.935648
Target:  5'- aGCGCCGcGgcuuCGGCGGGggcCGGcAGCCg -3'
miRNA:   3'- -CGCGGC-Caac-GCCGCCUa--GUCcUUGG- -5'
9341 3' -57.3 NC_002512.2 + 192894 0.66 0.935648
Target:  5'- aGCGCCGucgcgcuccGCGGCGG-UCcaGAGCCg -3'
miRNA:   3'- -CGCGGCcaa------CGCCGCCuAGucCUUGG- -5'
9341 3' -57.3 NC_002512.2 + 111789 0.66 0.935178
Target:  5'- -gGCCGGUccgcGCGGUcgccgccGGcgCcGGAGCCg -3'
miRNA:   3'- cgCGGCCAa---CGCCG-------CCuaGuCCUUGG- -5'
9341 3' -57.3 NC_002512.2 + 220301 0.66 0.93085
Target:  5'- cCGCCGaGccGcCGGgGGGcCGGGGGCCg -3'
miRNA:   3'- cGCGGC-CaaC-GCCgCCUaGUCCUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.