miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9341 5' -51.8 NC_002512.2 + 117685 0.66 0.997538
Target:  5'- aCGGGUcgacGAgcugCGUGGcgcaccugcGGCgGGUGCGCAGc -3'
miRNA:   3'- -GCCUA----CUa---GCACU---------UCGgCUACGUGUC- -5'
9341 5' -51.8 NC_002512.2 + 95251 0.66 0.997538
Target:  5'- aCGGc--GUUGUGggGCCaggGCACGGa -3'
miRNA:   3'- -GCCuacUAGCACuuCGGcuaCGUGUC- -5'
9341 5' -51.8 NC_002512.2 + 224151 0.66 0.997097
Target:  5'- aGGcgGAcgCGUGAGGCgGGgcgggggcGCGCGGa -3'
miRNA:   3'- gCCuaCUa-GCACUUCGgCUa-------CGUGUC- -5'
9341 5' -51.8 NC_002512.2 + 168811 0.66 0.996592
Target:  5'- gCGGugcGAUCG-GAAGUCGAaGgGCAGg -3'
miRNA:   3'- -GCCua-CUAGCaCUUCGGCUaCgUGUC- -5'
9341 5' -51.8 NC_002512.2 + 98501 0.66 0.996256
Target:  5'- cCGGGUGAacagCGggucGAGGUgaaucggggugacgaCGAUGCACAGc -3'
miRNA:   3'- -GCCUACUa---GCa---CUUCG---------------GCUACGUGUC- -5'
9341 5' -51.8 NC_002512.2 + 115289 0.66 0.996017
Target:  5'- gGGGUGAUCGUGAgcacgcAGaCGGUGaucCAGa -3'
miRNA:   3'- gCCUACUAGCACU------UCgGCUACgu-GUC- -5'
9341 5' -51.8 NC_002512.2 + 89361 0.66 0.995296
Target:  5'- gCGGAgauguucUGAUCgGUGAAcugcgaguaguuGCCGAUGCGggcCAGg -3'
miRNA:   3'- -GCCU-------ACUAG-CACUU------------CGGCUACGU---GUC- -5'
9341 5' -51.8 NC_002512.2 + 149501 0.66 0.994629
Target:  5'- gCGGGUGGUCaaaAGGCCGcgGC-CGGa -3'
miRNA:   3'- -GCCUACUAGcacUUCGGCuaCGuGUC- -5'
9341 5' -51.8 NC_002512.2 + 220597 0.68 0.984761
Target:  5'- gGGAUccGGUCGUGcgcGAGCUGGUGCugugcCGGg -3'
miRNA:   3'- gCCUA--CUAGCAC---UUCGGCUACGu----GUC- -5'
9341 5' -51.8 NC_002512.2 + 152858 0.76 0.727644
Target:  5'- aGGcgGAaCGUGcAGCCGGUGUGCGGg -3'
miRNA:   3'- gCCuaCUaGCACuUCGGCUACGUGUC- -5'
9341 5' -51.8 NC_002512.2 + 91696 0.8 0.535444
Target:  5'- aGGcgGAUCGUGGAGCUGAUGgagaaGCGGg -3'
miRNA:   3'- gCCuaCUAGCACUUCGGCUACg----UGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.