miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9342 3' -52.7 NC_002512.2 + 204856 0.66 0.996342
Target:  5'- gGUCggUCCucguGGAGGUCCGCgACCg -3'
miRNA:   3'- gCAGgaAGGccuuCUUCUAGGCG-UGG- -5'
9342 3' -52.7 NC_002512.2 + 127822 0.66 0.996342
Target:  5'- gGUCCcggcUCCGGGAGGucGUCgGCGgCg -3'
miRNA:   3'- gCAGGa---AGGCCUUCUucUAGgCGUgG- -5'
9342 3' -52.7 NC_002512.2 + 166197 0.66 0.996342
Target:  5'- cCGUggCCUUCuugggCGGcGAGGAGggCCGCGCg -3'
miRNA:   3'- -GCA--GGAAG-----GCC-UUCUUCuaGGCGUGg -5'
9342 3' -52.7 NC_002512.2 + 40817 0.66 0.995744
Target:  5'- gGUCgUUCUGGggGGA-AUCgGUACUu -3'
miRNA:   3'- gCAGgAAGGCCuuCUUcUAGgCGUGG- -5'
9342 3' -52.7 NC_002512.2 + 217297 0.66 0.995744
Target:  5'- --aCCgcgcgCCGGGAGAuGAUCgGCuCCg -3'
miRNA:   3'- gcaGGaa---GGCCUUCUuCUAGgCGuGG- -5'
9342 3' -52.7 NC_002512.2 + 197730 0.66 0.995744
Target:  5'- gGUgCgggaggcCCuGGAGAAGAUgCGCGCCa -3'
miRNA:   3'- gCAgGaa-----GGcCUUCUUCUAgGCGUGG- -5'
9342 3' -52.7 NC_002512.2 + 176835 0.66 0.995744
Target:  5'- aG-CCUcgCCGaGAAGu-GAUCCGuCACCu -3'
miRNA:   3'- gCaGGAa-GGC-CUUCuuCUAGGC-GUGG- -5'
9342 3' -52.7 NC_002512.2 + 88121 0.66 0.99555
Target:  5'- uGUCCUgcaCGGcgcggcggauguagGGGAcGAUCCGC-CCg -3'
miRNA:   3'- gCAGGAag-GCC--------------UUCUuCUAGGCGuGG- -5'
9342 3' -52.7 NC_002512.2 + 228159 0.66 0.995069
Target:  5'- gGUCCacgcggagCCGGAGcGGGAgCgGCACCg -3'
miRNA:   3'- gCAGGaa------GGCCUUcUUCUaGgCGUGG- -5'
9342 3' -52.7 NC_002512.2 + 192510 0.66 0.995069
Target:  5'- gGUCUUcUCGGAGGAcaugGGGUCCGacgacgagauCACCc -3'
miRNA:   3'- gCAGGAaGGCCUUCU----UCUAGGC----------GUGG- -5'
9342 3' -52.7 NC_002512.2 + 226534 0.66 0.99485
Target:  5'- cCGUCCUcgaUCGGAGGAAGAggaaggcgucggacUCCggcucGCGCUc -3'
miRNA:   3'- -GCAGGAa--GGCCUUCUUCU--------------AGG-----CGUGG- -5'
9342 3' -52.7 NC_002512.2 + 216219 0.66 0.994309
Target:  5'- uCG-CCUcgUCCGGGAGcuGGAgCCGCGgCg -3'
miRNA:   3'- -GCaGGA--AGGCCUUCu-UCUaGGCGUgG- -5'
9342 3' -52.7 NC_002512.2 + 194116 0.66 0.994309
Target:  5'- aCGaUCaa-CCGGAcGGAGAUCaCGCACg -3'
miRNA:   3'- -GC-AGgaaGGCCUuCUUCUAG-GCGUGg -5'
9342 3' -52.7 NC_002512.2 + 175605 0.66 0.994309
Target:  5'- gGUCCUUCgGGuGGGgugccAGGgucgCCGaCGCCg -3'
miRNA:   3'- gCAGGAAGgCCuUCU-----UCUa---GGC-GUGG- -5'
9342 3' -52.7 NC_002512.2 + 166399 0.66 0.994309
Target:  5'- -uUCCgcCCGGggGAuGGUCCuGCcgaGCCu -3'
miRNA:   3'- gcAGGaaGGCCuuCUuCUAGG-CG---UGG- -5'
9342 3' -52.7 NC_002512.2 + 181034 0.66 0.993458
Target:  5'- gCGUCCUg--GGcAGGAGG-CCGCACa -3'
miRNA:   3'- -GCAGGAaggCCuUCUUCUaGGCGUGg -5'
9342 3' -52.7 NC_002512.2 + 178230 0.66 0.993368
Target:  5'- gGUCCagggucUCCGG-GGAcggcgcggucuccGGGUCCGuCGCCa -3'
miRNA:   3'- gCAGGa-----AGGCCuUCU-------------UCUAGGC-GUGG- -5'
9342 3' -52.7 NC_002512.2 + 144595 0.66 0.993276
Target:  5'- gCGUCgaUCCccucgcacGAGGUCCGCGCCg -3'
miRNA:   3'- -GCAGgaAGGccuuc---UUCUAGGCGUGG- -5'
9342 3' -52.7 NC_002512.2 + 136425 0.66 0.9929
Target:  5'- -aUCCcaugaCCGGAcacgAGggGAcccggggccacuacaUCCGCGCCg -3'
miRNA:   3'- gcAGGaa---GGCCU----UCuuCU---------------AGGCGUGG- -5'
9342 3' -52.7 NC_002512.2 + 212962 0.66 0.992508
Target:  5'- aCGgcgCCU-CCGGGGucGAGAUCUGCgACCu -3'
miRNA:   3'- -GCa--GGAaGGCCUUc-UUCUAGGCG-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.