miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9342 5' -50.2 NC_002512.2 + 158797 0.66 0.999215
Target:  5'- cCGGGgcGUcgucgacuucucGGCCGCGAaccUGCGGGAGGu -3'
miRNA:   3'- -GUCCauCAu-----------CUGGUGCU---ACGUCUUCU- -5'
9342 5' -50.2 NC_002512.2 + 191284 0.66 0.999079
Target:  5'- aCGGGga--GGGCgGCGggGCGGggGAc -3'
miRNA:   3'- -GUCCaucaUCUGgUGCuaCGUCuuCU- -5'
9342 5' -50.2 NC_002512.2 + 166476 0.66 0.99888
Target:  5'- gCGGGgacGGcgGGACCGCGGguCGGAGGAa -3'
miRNA:   3'- -GUCCa--UCa-UCUGGUGCUacGUCUUCU- -5'
9342 5' -50.2 NC_002512.2 + 121828 0.66 0.998744
Target:  5'- aCGGGgcgGGU-GACCugACGAucgcgguccgcaaccUGCGGAAGAa -3'
miRNA:   3'- -GUCCa--UCAuCUGG--UGCU---------------ACGUCUUCU- -5'
9342 5' -50.2 NC_002512.2 + 97819 0.66 0.998646
Target:  5'- cCGGGgacgcggAGUAGAggGCGgcGCGGggGAa -3'
miRNA:   3'- -GUCCa------UCAUCUggUGCuaCGUCuuCU- -5'
9342 5' -50.2 NC_002512.2 + 150043 0.66 0.998371
Target:  5'- gGGGgccggGGACgACGggGCGGGAGGg -3'
miRNA:   3'- gUCCauca-UCUGgUGCuaCGUCUUCU- -5'
9342 5' -50.2 NC_002512.2 + 103273 0.66 0.998371
Target:  5'- -uGGU-GUAGACCACGuaggacccGCuGAGGAg -3'
miRNA:   3'- guCCAuCAUCUGGUGCua------CGuCUUCU- -5'
9342 5' -50.2 NC_002512.2 + 149501 0.66 0.998249
Target:  5'- gCGGGUGGUcaaaAGGCCGCGGccggagcgggccgGcCAGGAGGa -3'
miRNA:   3'- -GUCCAUCA----UCUGGUGCUa------------C-GUCUUCU- -5'
9342 5' -50.2 NC_002512.2 + 113826 0.67 0.99768
Target:  5'- gGGGUAGUAGGCgAUGAaGaCGG-AGAa -3'
miRNA:   3'- gUCCAUCAUCUGgUGCUaC-GUCuUCU- -5'
9342 5' -50.2 NC_002512.2 + 88711 0.67 0.99768
Target:  5'- -cGGUAGcGGGCCAgGAagacgucGCGGAAGGu -3'
miRNA:   3'- guCCAUCaUCUGGUgCUa------CGUCUUCU- -5'
9342 5' -50.2 NC_002512.2 + 157218 0.67 0.99676
Target:  5'- cCAGGUGcUGGACUAC--UGCAaGAAGAa -3'
miRNA:   3'- -GUCCAUcAUCUGGUGcuACGU-CUUCU- -5'
9342 5' -50.2 NC_002512.2 + 119247 0.68 0.995556
Target:  5'- gAGGUGGU-GAUgACGuacGUGCGGAAGc -3'
miRNA:   3'- gUCCAUCAuCUGgUGC---UACGUCUUCu -5'
9342 5' -50.2 NC_002512.2 + 206060 0.68 0.99483
Target:  5'- uCAGGUacagGGUGGccaccuggguGCCGCGGUGCAGcugcagguucGGGAg -3'
miRNA:   3'- -GUCCA----UCAUC----------UGGUGCUACGUC----------UUCU- -5'
9342 5' -50.2 NC_002512.2 + 217731 0.68 0.994011
Target:  5'- aGGGgcGgcagGGACCGCGAcuUGaAGAAGAa -3'
miRNA:   3'- gUCCauCa---UCUGGUGCU--ACgUCUUCU- -5'
9342 5' -50.2 NC_002512.2 + 103006 0.68 0.992993
Target:  5'- cCAGGUugauGUAGGCCGCGuaGUccaccacgggcucGUAGAAGAc -3'
miRNA:   3'- -GUCCAu---CAUCUGGUGC--UA-------------CGUCUUCU- -5'
9342 5' -50.2 NC_002512.2 + 114196 0.69 0.984961
Target:  5'- uCGGGcccGgcGGCCAUGAggagGCGGAAGAu -3'
miRNA:   3'- -GUCCau-CauCUGGUGCUa---CGUCUUCU- -5'
9342 5' -50.2 NC_002512.2 + 227477 0.7 0.981049
Target:  5'- gGGGgcGgccGGCCGCGAggagGUAGGAGAc -3'
miRNA:   3'- gUCCauCau-CUGGUGCUa---CGUCUUCU- -5'
9342 5' -50.2 NC_002512.2 + 125196 0.7 0.981049
Target:  5'- cCAGGUGGccGuCCAgGAcGCGGAGGAg -3'
miRNA:   3'- -GUCCAUCauCuGGUgCUaCGUCUUCU- -5'
9342 5' -50.2 NC_002512.2 + 228282 0.7 0.975404
Target:  5'- cCGGGUGGgagagggaggacgGGACC-CGggGCGGggGGa -3'
miRNA:   3'- -GUCCAUCa------------UCUGGuGCuaCGUCuuCU- -5'
9342 5' -50.2 NC_002512.2 + 182028 0.71 0.971014
Target:  5'- -cGGUAGaAGGCCcucguGCGGUGCAGGAu- -3'
miRNA:   3'- guCCAUCaUCUGG-----UGCUACGUCUUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.