miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9343 3' -54.7 NC_002512.2 + 91575 0.65 0.975835
Target:  5'- cUCGCGGauccgcuACGA-GCgCGCGCGGCAc-- -3'
miRNA:   3'- aAGUGCU-------UGCUgCG-GCGCGUCGUauc -5'
9343 3' -54.7 NC_002512.2 + 112163 0.65 0.975835
Target:  5'- --gGCGAGcCGGCGCucgagcccgcacgCGCGgAGCAUGGc -3'
miRNA:   3'- aagUGCUU-GCUGCG-------------GCGCgUCGUAUC- -5'
9343 3' -54.7 NC_002512.2 + 225400 0.66 0.973526
Target:  5'- cUUCGgGGACGGCGCCGgGgucgggguCGGguUGGg -3'
miRNA:   3'- -AAGUgCUUGCUGCGGCgC--------GUCguAUC- -5'
9343 3' -54.7 NC_002512.2 + 103322 0.66 0.973526
Target:  5'- --gACGGcCGAgGcCCGgGCGGCGUAGc -3'
miRNA:   3'- aagUGCUuGCUgC-GGCgCGUCGUAUC- -5'
9343 3' -54.7 NC_002512.2 + 101897 0.66 0.973526
Target:  5'- -gCGCGGG-GACGCCGacggggGCGGCGUGu -3'
miRNA:   3'- aaGUGCUUgCUGCGGCg-----CGUCGUAUc -5'
9343 3' -54.7 NC_002512.2 + 109722 0.66 0.970777
Target:  5'- aUCACGGACGAgaGCCGCGaggAGUu--- -3'
miRNA:   3'- aAGUGCUUGCUg-CGGCGCg--UCGuauc -5'
9343 3' -54.7 NC_002512.2 + 227673 0.66 0.970777
Target:  5'- --aGCG-GCGGCGCCGC-CGGCGa-- -3'
miRNA:   3'- aagUGCuUGCUGCGGCGcGUCGUauc -5'
9343 3' -54.7 NC_002512.2 + 127400 0.66 0.970777
Target:  5'- -gCGgGAACGACGCCGaggGgAGCcUGGg -3'
miRNA:   3'- aaGUgCUUGCUGCGGCg--CgUCGuAUC- -5'
9343 3' -54.7 NC_002512.2 + 181081 0.66 0.969033
Target:  5'- cUCGCGAuccucucccugugccGCGACGCCcGCcuCAGCGUcuGGg -3'
miRNA:   3'- aAGUGCU---------------UGCUGCGG-CGc-GUCGUA--UC- -5'
9343 3' -54.7 NC_002512.2 + 205642 0.66 0.96783
Target:  5'- -cCGCGGGgGACGCCGU-CGGCGg-- -3'
miRNA:   3'- aaGUGCUUgCUGCGGCGcGUCGUauc -5'
9343 3' -54.7 NC_002512.2 + 91885 0.66 0.96783
Target:  5'- -gCGCGGGCGGCG--GCGCGGCGc-- -3'
miRNA:   3'- aaGUGCUUGCUGCggCGCGUCGUauc -5'
9343 3' -54.7 NC_002512.2 + 226785 0.66 0.96783
Target:  5'- gUCuCGGGCGACGCCGUGgucuCGGCc--- -3'
miRNA:   3'- aAGuGCUUGCUGCGGCGC----GUCGuauc -5'
9343 3' -54.7 NC_002512.2 + 429 0.66 0.96783
Target:  5'- -cCGCGAcCGACGCCGCaaAGCc--- -3'
miRNA:   3'- aaGUGCUuGCUGCGGCGcgUCGuauc -5'
9343 3' -54.7 NC_002512.2 + 122101 0.66 0.96783
Target:  5'- -aCGCGAGguCGGCgcugacgucgGCCGCGCuggacAGCGUGGa -3'
miRNA:   3'- aaGUGCUU--GCUG----------CGGCGCG-----UCGUAUC- -5'
9343 3' -54.7 NC_002512.2 + 148463 0.66 0.96783
Target:  5'- -cCGCgGGACGGaGCCGCGaCGGCGgggAGg -3'
miRNA:   3'- aaGUG-CUUGCUgCGGCGC-GUCGUa--UC- -5'
9343 3' -54.7 NC_002512.2 + 198964 0.66 0.96783
Target:  5'- gUCGCG--UGGCGUCGCGUcGCGUGa -3'
miRNA:   3'- aAGUGCuuGCUGCGGCGCGuCGUAUc -5'
9343 3' -54.7 NC_002512.2 + 229832 0.66 0.96783
Target:  5'- -cCGCGAcCGACGCCGCaaAGCc--- -3'
miRNA:   3'- aaGUGCUuGCUGCGGCGcgUCGuauc -5'
9343 3' -54.7 NC_002512.2 + 227560 0.66 0.964678
Target:  5'- -cCGCGAcCGAggccuccggacCGCCgGCGCAGCAg-- -3'
miRNA:   3'- aaGUGCUuGCU-----------GCGG-CGCGUCGUauc -5'
9343 3' -54.7 NC_002512.2 + 221744 0.66 0.964678
Target:  5'- cUgGCGGACG-CGCCGUcgaacgGCAGC-UGGg -3'
miRNA:   3'- aAgUGCUUGCuGCGGCG------CGUCGuAUC- -5'
9343 3' -54.7 NC_002512.2 + 204695 0.66 0.964678
Target:  5'- gUCGCGGcggacGCGACGUCGgCGaCGGCGg-- -3'
miRNA:   3'- aAGUGCU-----UGCUGCGGC-GC-GUCGUauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.