miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9343 5' -52.8 NC_002512.2 + 189985 0.66 0.993309
Target:  5'- -aCCGCGUCUaCAGGaaggucgaccucaagUUgGCCgCGGUCg -3'
miRNA:   3'- caGGUGCAGAaGUCC---------------AAgUGG-GCUAG- -5'
9343 5' -52.8 NC_002512.2 + 176998 0.66 0.99293
Target:  5'- cGUCCAUGUaCUucgugggcgUCAGGgcCGCCUGcgCg -3'
miRNA:   3'- -CAGGUGCA-GA---------AGUCCaaGUGGGCuaG- -5'
9343 5' -52.8 NC_002512.2 + 225700 0.66 0.990769
Target:  5'- cUCCgGCGUCcUCAGGaugugUCGCCCGc-- -3'
miRNA:   3'- cAGG-UGCAGaAGUCCa----AGUGGGCuag -5'
9343 5' -52.8 NC_002512.2 + 200978 0.66 0.990769
Target:  5'- --aCACGUcCUUCAGGUcCACCUucUCg -3'
miRNA:   3'- cagGUGCA-GAAGUCCAaGUGGGcuAG- -5'
9343 5' -52.8 NC_002512.2 + 71995 0.66 0.990405
Target:  5'- uUCCGCuUCUucaguacuuauuacUCAGGgcgUCucCCCGAUCa -3'
miRNA:   3'- cAGGUGcAGA--------------AGUCCa--AGu-GGGCUAG- -5'
9343 5' -52.8 NC_002512.2 + 217167 0.66 0.98951
Target:  5'- cUCCAuCGUCgUCGGGUucaUCGCCCu--- -3'
miRNA:   3'- cAGGU-GCAGaAGUCCA---AGUGGGcuag -5'
9343 5' -52.8 NC_002512.2 + 44051 0.66 0.98951
Target:  5'- gGUCCAC-UUUUCGGGg-CGCCUaGAUCg -3'
miRNA:   3'- -CAGGUGcAGAAGUCCaaGUGGG-CUAG- -5'
9343 5' -52.8 NC_002512.2 + 209770 0.67 0.978932
Target:  5'- cUCCGCGUCUUUcGGcaaGCCCGGc- -3'
miRNA:   3'- cAGGUGCAGAAGuCCaagUGGGCUag -5'
9343 5' -52.8 NC_002512.2 + 196609 0.67 0.978932
Target:  5'- cGUCCGCaccaUCUcCcGGUUCGCCCGGg- -3'
miRNA:   3'- -CAGGUGc---AGAaGuCCAAGUGGGCUag -5'
9343 5' -52.8 NC_002512.2 + 193201 0.68 0.976591
Target:  5'- -aCCGCGUCUUCGGcucgccgUUGCCCGGc- -3'
miRNA:   3'- caGGUGCAGAAGUCca-----AGUGGGCUag -5'
9343 5' -52.8 NC_002512.2 + 26260 0.68 0.971345
Target:  5'- -aCCGCGUUguaUCGaccggagauauGGUUCACgCCGGUCg -3'
miRNA:   3'- caGGUGCAGa--AGU-----------CCAAGUG-GGCUAG- -5'
9343 5' -52.8 NC_002512.2 + 183111 0.68 0.971345
Target:  5'- gGUCUucgaGCGUCUgaucUAGGUUCaggGCCCGGUUc -3'
miRNA:   3'- -CAGG----UGCAGAa---GUCCAAG---UGGGCUAG- -5'
9343 5' -52.8 NC_002512.2 + 152091 0.68 0.968427
Target:  5'- -cCCGCGUCccguUUCGGGUUUuuaUCGAUCa -3'
miRNA:   3'- caGGUGCAG----AAGUCCAAGug-GGCUAG- -5'
9343 5' -52.8 NC_002512.2 + 169879 0.68 0.968427
Target:  5'- cGUCCGCagcuUCUUCAGcgcGUUCGCCUucuuGAUCg -3'
miRNA:   3'- -CAGGUGc---AGAAGUC---CAAGUGGG----CUAG- -5'
9343 5' -52.8 NC_002512.2 + 223262 0.68 0.965304
Target:  5'- cGUCCGCGUCgUCGGGgggcgggaCGCCgCGcgCa -3'
miRNA:   3'- -CAGGUGCAGaAGUCCaa------GUGG-GCuaG- -5'
9343 5' -52.8 NC_002512.2 + 219639 0.69 0.950653
Target:  5'- -cCCGCuUCUUCgagaaccggAGGUUCGCCCG-UCg -3'
miRNA:   3'- caGGUGcAGAAG---------UCCAAGUGGGCuAG- -5'
9343 5' -52.8 NC_002512.2 + 216178 0.69 0.946429
Target:  5'- -cCCGCGUC-UCGGGaucgCGCCCguGAUCa -3'
miRNA:   3'- caGGUGCAGaAGUCCaa--GUGGG--CUAG- -5'
9343 5' -52.8 NC_002512.2 + 191612 0.7 0.927725
Target:  5'- aGUCCucgGCGUCUUCucgcgcgaucccUCGCCCGAUCg -3'
miRNA:   3'- -CAGG---UGCAGAAGucca--------AGUGGGCUAG- -5'
9343 5' -52.8 NC_002512.2 + 216872 0.73 0.831087
Target:  5'- cGUCCGCGUCgucgUUCAGGaUCGCCaGGUUc -3'
miRNA:   3'- -CAGGUGCAG----AAGUCCaAGUGGgCUAG- -5'
9343 5' -52.8 NC_002512.2 + 176713 0.73 0.805373
Target:  5'- -aUCGCGUCcUCAGGUUCGCgUUGAUCu -3'
miRNA:   3'- caGGUGCAGaAGUCCAAGUG-GGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.