miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9344 3' -58.5 NC_002512.2 + 7620 0.66 0.925144
Target:  5'- gCgGCGCGUUUGGUcaCCGuGGaGGccaAUGGg -3'
miRNA:   3'- aGgCGCGCAAACCAa-GGC-CC-CC---UGCC- -5'
9344 3' -58.5 NC_002512.2 + 160663 0.66 0.919966
Target:  5'- aCCGCgGCGacggGGaUUCGGGGGGgacuuCGGg -3'
miRNA:   3'- aGGCG-CGCaaa-CCaAGGCCCCCU-----GCC- -5'
9344 3' -58.5 NC_002512.2 + 124780 0.66 0.919966
Target:  5'- aCCGCGCaGUcccgGG-UCCGGGuccagcuGACGGa -3'
miRNA:   3'- aGGCGCG-CAaa--CCaAGGCCCc------CUGCC- -5'
9344 3' -58.5 NC_002512.2 + 186644 0.66 0.919966
Target:  5'- cCCGCGgGccacUGGgcccagcUCCGGGaGGACGu -3'
miRNA:   3'- aGGCGCgCaa--ACCa------AGGCCC-CCUGCc -5'
9344 3' -58.5 NC_002512.2 + 158839 0.66 0.919966
Target:  5'- gCUGaCGCGgg-GGagCgGGGGGACGu -3'
miRNA:   3'- aGGC-GCGCaaaCCaaGgCCCCCUGCc -5'
9344 3' -58.5 NC_002512.2 + 131992 0.66 0.918371
Target:  5'- gUCGCGUGggccgccccgGGcgCCGGGGGgaccucgGCGGc -3'
miRNA:   3'- aGGCGCGCaaa-------CCaaGGCCCCC-------UGCC- -5'
9344 3' -58.5 NC_002512.2 + 213611 0.66 0.907258
Target:  5'- gCCGuCGCGUccggucccugacucUUGGccgCCGcGGGcGACGGc -3'
miRNA:   3'- aGGC-GCGCA--------------AACCaa-GGC-CCC-CUGCC- -5'
9344 3' -58.5 NC_002512.2 + 227453 0.66 0.903171
Target:  5'- cUUCGCGCugccgGGggagaggCCGGGGG-CGGc -3'
miRNA:   3'- -AGGCGCGcaaa-CCaa-----GGCCCCCuGCC- -5'
9344 3' -58.5 NC_002512.2 + 109842 0.67 0.890942
Target:  5'- gCCGgGCGUcgGGgaCCGGcguGGcGGCGGu -3'
miRNA:   3'- aGGCgCGCAaaCCaaGGCC---CC-CUGCC- -5'
9344 3' -58.5 NC_002512.2 + 191290 0.67 0.890942
Target:  5'- --aGgGCGgcgGGg--CGGGGGACGGg -3'
miRNA:   3'- aggCgCGCaaaCCaagGCCCCCUGCC- -5'
9344 3' -58.5 NC_002512.2 + 204810 0.67 0.885175
Target:  5'- gUCCGCGUcccgGGggcgcggcggcuccgUCCGGGaGGACGa -3'
miRNA:   3'- -AGGCGCGcaaaCCa--------------AGGCCC-CCUGCc -5'
9344 3' -58.5 NC_002512.2 + 221281 0.67 0.884524
Target:  5'- --gGCGCGUggagGGgggggaggCCGGGGucGGCGGg -3'
miRNA:   3'- aggCGCGCAaa--CCaa------GGCCCC--CUGCC- -5'
9344 3' -58.5 NC_002512.2 + 100051 0.67 0.883872
Target:  5'- cUCCGCcuccaucGCGacgGGggCCGcgggccGGGGACGGa -3'
miRNA:   3'- -AGGCG-------CGCaaaCCaaGGC------CCCCUGCC- -5'
9344 3' -58.5 NC_002512.2 + 181382 0.67 0.883217
Target:  5'- gCCGCGCGUcgucgugcgcccUGGccUCCGccGGGGACGc -3'
miRNA:   3'- aGGCGCGCAa-----------ACCa-AGGC--CCCCUGCc -5'
9344 3' -58.5 NC_002512.2 + 113141 0.67 0.881902
Target:  5'- aCCGCGCGcggGGcgCCGGccucgccgcggccGGGCGGg -3'
miRNA:   3'- aGGCGCGCaaaCCaaGGCCc------------CCUGCC- -5'
9344 3' -58.5 NC_002512.2 + 184376 0.67 0.880579
Target:  5'- cCCGcCGCGggcgcuuucggcgUGGccgccgCCGGGGGGCGc -3'
miRNA:   3'- aGGC-GCGCaa-----------ACCaa----GGCCCCCUGCc -5'
9344 3' -58.5 NC_002512.2 + 198152 0.67 0.877909
Target:  5'- cCCGCGCGggccgGGUcggcgCCGGccGGCGGa -3'
miRNA:   3'- aGGCGCGCaaa--CCAa----GGCCccCUGCC- -5'
9344 3' -58.5 NC_002512.2 + 228274 0.67 0.877909
Target:  5'- aCCGCGgacCGggUGGgagaGGGaGGACGGg -3'
miRNA:   3'- aGGCGC---GCaaACCaaggCCC-CCUGCC- -5'
9344 3' -58.5 NC_002512.2 + 124305 0.67 0.871101
Target:  5'- aCCGCGCGgagcugaucGGggCCGcGGcGGACGu -3'
miRNA:   3'- aGGCGCGCaaa------CCaaGGC-CC-CCUGCc -5'
9344 3' -58.5 NC_002512.2 + 92715 0.67 0.864103
Target:  5'- -aCGC-CGUacGGacgUCCGGGGGGCGc -3'
miRNA:   3'- agGCGcGCAaaCCa--AGGCCCCCUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.