miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9344 5' -58.2 NC_002512.2 + 133489 0.66 0.906434
Target:  5'- gGUCCGaggCCGCcggugaguccccgGUUUCCUcuccuccCCCCGAGAu -3'
miRNA:   3'- -CAGGCa--GGUGa------------CGAAGGA-------GGGGCUCU- -5'
9344 5' -58.2 NC_002512.2 + 214191 0.66 0.890985
Target:  5'- cGUCgCGgaggaggacCCGCUGCgcCCgcugCCCCGGGAc -3'
miRNA:   3'- -CAG-GCa--------GGUGACGaaGGa---GGGGCUCU- -5'
9344 5' -58.2 NC_002512.2 + 108613 0.66 0.884436
Target:  5'- aGUUCGaCCGCguccGCUUCCUCCUgaccugcaaCGGGAc -3'
miRNA:   3'- -CAGGCaGGUGa---CGAAGGAGGG---------GCUCU- -5'
9344 5' -58.2 NC_002512.2 + 210594 0.67 0.870728
Target:  5'- cGUUCGUCCGgaGg-UCCUCUCCGAu- -3'
miRNA:   3'- -CAGGCAGGUgaCgaAGGAGGGGCUcu -5'
9344 5' -58.2 NC_002512.2 + 33617 0.67 0.863576
Target:  5'- -gCCGUCCGC-GCUUCCgCCgCGAc- -3'
miRNA:   3'- caGGCAGGUGaCGAAGGaGGgGCUcu -5'
9344 5' -58.2 NC_002512.2 + 185174 0.67 0.848703
Target:  5'- --gCGUCCAg-GaCUUCUUCUCCGAGAa -3'
miRNA:   3'- cagGCAGGUgaC-GAAGGAGGGGCUCU- -5'
9344 5' -58.2 NC_002512.2 + 171880 0.67 0.840993
Target:  5'- -gCCGUCCucgGCgUCCcccucgUCCCCGGGAc -3'
miRNA:   3'- caGGCAGGugaCGaAGG------AGGGGCUCU- -5'
9344 5' -58.2 NC_002512.2 + 164135 0.67 0.840993
Target:  5'- aGUCCGUCC---GCUUCCUCUucacccagaucaUCGAGGa -3'
miRNA:   3'- -CAGGCAGGugaCGAAGGAGG------------GGCUCU- -5'
9344 5' -58.2 NC_002512.2 + 142606 0.67 0.840993
Target:  5'- cUCCGUCCACcccacgaccgcgUGU-UCgCUCCCCgGAGAc -3'
miRNA:   3'- cAGGCAGGUG------------ACGaAG-GAGGGG-CUCU- -5'
9344 5' -58.2 NC_002512.2 + 125027 0.68 0.833108
Target:  5'- -gCCGcCCGCUGCgcgaggucCCUCCCCGc-- -3'
miRNA:   3'- caGGCaGGUGACGaa------GGAGGGGCucu -5'
9344 5' -58.2 NC_002512.2 + 208947 0.68 0.833108
Target:  5'- -aCCGcugCCACUGCgUCCUCCuCCGu-- -3'
miRNA:   3'- caGGCa--GGUGACGaAGGAGG-GGCucu -5'
9344 5' -58.2 NC_002512.2 + 1023 0.68 0.825056
Target:  5'- -gCCGUCCucCUGCUUCCuuuucUCCCCu--- -3'
miRNA:   3'- caGGCAGGu-GACGAAGG-----AGGGGcucu -5'
9344 5' -58.2 NC_002512.2 + 151552 0.68 0.816842
Target:  5'- -cCCGUCC-CgGuCUcgCCUUCCCGAGAg -3'
miRNA:   3'- caGGCAGGuGaC-GAa-GGAGGGGCUCU- -5'
9344 5' -58.2 NC_002512.2 + 211207 0.68 0.799958
Target:  5'- -gCCGcCCACgaGCUcuUCCUCUCCGAcGAg -3'
miRNA:   3'- caGGCaGGUGa-CGA--AGGAGGGGCU-CU- -5'
9344 5' -58.2 NC_002512.2 + 147663 0.69 0.764579
Target:  5'- -aCCGUCaccgGCcccGCUUCCcgCCCCGGGAg -3'
miRNA:   3'- caGGCAGg---UGa--CGAAGGa-GGGGCUCU- -5'
9344 5' -58.2 NC_002512.2 + 220280 0.69 0.755445
Target:  5'- aGUUCGUCgGCaGCUUCCUgCCCGccGAg -3'
miRNA:   3'- -CAGGCAGgUGaCGAAGGAgGGGCu-CU- -5'
9344 5' -58.2 NC_002512.2 + 213548 0.69 0.755445
Target:  5'- --gCGUCUGCUGCgcggggUCCgCCUCGAGAg -3'
miRNA:   3'- cagGCAGGUGACGa-----AGGaGGGGCUCU- -5'
9344 5' -58.2 NC_002512.2 + 186132 0.69 0.736883
Target:  5'- -cUCGUCUGCaauaGCUUCCucggcgucuUCCCCGAGAa -3'
miRNA:   3'- caGGCAGGUGa---CGAAGG---------AGGGGCUCU- -5'
9344 5' -58.2 NC_002512.2 + 136277 0.7 0.727472
Target:  5'- -cCCGUCCAacgGCcgUUCUUCCCCGAc- -3'
miRNA:   3'- caGGCAGGUga-CG--AAGGAGGGGCUcu -5'
9344 5' -58.2 NC_002512.2 + 113196 0.71 0.640332
Target:  5'- cGUCCGcUCCGCgaGCgggagccgggUCCUCgCCCGGGGa -3'
miRNA:   3'- -CAGGC-AGGUGa-CGa---------AGGAG-GGGCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.