miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9345 3' -55.3 NC_002512.2 + 186821 0.66 0.980257
Target:  5'- cGGGAcCGgugccUCggCGAGGcccugcGCGUCGCCGa -3'
miRNA:   3'- cUCCUaGC-----AGaaGCUCC------UGCAGCGGC- -5'
9345 3' -55.3 NC_002512.2 + 190337 0.66 0.979411
Target:  5'- cGGGuUCGUCUaccucuacgacgaCGGGGGCGUCGgcCCGg -3'
miRNA:   3'- cUCCuAGCAGAa------------GCUCCUGCAGC--GGC- -5'
9345 3' -55.3 NC_002512.2 + 211162 0.66 0.978093
Target:  5'- cAGGG-CGUgCUgccCGAGcGCGUCGCCGc -3'
miRNA:   3'- cUCCUaGCA-GAa--GCUCcUGCAGCGGC- -5'
9345 3' -55.3 NC_002512.2 + 82375 0.66 0.975758
Target:  5'- cGGGAUCGg---CG-GGACGggagaagCGCCGg -3'
miRNA:   3'- cUCCUAGCagaaGCuCCUGCa------GCGGC- -5'
9345 3' -55.3 NC_002512.2 + 182090 0.66 0.973247
Target:  5'- cGGGGUCuggg-CGAacaGGAUGUCGCCGa -3'
miRNA:   3'- cUCCUAGcagaaGCU---CCUGCAGCGGC- -5'
9345 3' -55.3 NC_002512.2 + 201707 0.66 0.973247
Target:  5'- cGGGAUCGg---CGGcGGCGUCGUCGu -3'
miRNA:   3'- cUCCUAGCagaaGCUcCUGCAGCGGC- -5'
9345 3' -55.3 NC_002512.2 + 27710 0.66 0.973247
Target:  5'- aGAGGAaaUCGUCguugagaUGAGGA--UCGCCGu -3'
miRNA:   3'- -CUCCU--AGCAGaa-----GCUCCUgcAGCGGC- -5'
9345 3' -55.3 NC_002512.2 + 225552 0.66 0.970552
Target:  5'- gGAGGA-CGacuUCUUCGGcGACGagGCCGa -3'
miRNA:   3'- -CUCCUaGC---AGAAGCUcCUGCagCGGC- -5'
9345 3' -55.3 NC_002512.2 + 165718 0.66 0.970272
Target:  5'- ---cGUCGUCggggggUCGGGGGCGcaucgcuucaccuUCGCCGa -3'
miRNA:   3'- cuccUAGCAGa-----AGCUCCUGC-------------AGCGGC- -5'
9345 3' -55.3 NC_002512.2 + 193367 0.66 0.967668
Target:  5'- gGAGGAguUCGUCgccgcgggCGGGGACGaCaCCGa -3'
miRNA:   3'- -CUCCU--AGCAGaa------GCUCCUGCaGcGGC- -5'
9345 3' -55.3 NC_002512.2 + 225421 0.67 0.96459
Target:  5'- cGGGGUCGgg-UUGGGGcCGaCGCCGa -3'
miRNA:   3'- cUCCUAGCagaAGCUCCuGCaGCGGC- -5'
9345 3' -55.3 NC_002512.2 + 193946 0.67 0.96459
Target:  5'- cGGGGAacgUCGUCUggcgCGAGaGGC--CGCCGg -3'
miRNA:   3'- -CUCCU---AGCAGAa---GCUC-CUGcaGCGGC- -5'
9345 3' -55.3 NC_002512.2 + 77347 0.67 0.96459
Target:  5'- -cGGuUCGcCUUCGucGGAacgcCGUCGCCGa -3'
miRNA:   3'- cuCCuAGCaGAAGCu-CCU----GCAGCGGC- -5'
9345 3' -55.3 NC_002512.2 + 220795 0.67 0.957829
Target:  5'- uGGGGAUCGUCcUCGAcccgcucGugGUccCGCCGc -3'
miRNA:   3'- -CUCCUAGCAGaAGCUc------CugCA--GCGGC- -5'
9345 3' -55.3 NC_002512.2 + 200742 0.67 0.954138
Target:  5'- -cGGGUCGUac-CGGGcGugGUCGUCGu -3'
miRNA:   3'- cuCCUAGCAgaaGCUC-CugCAGCGGC- -5'
9345 3' -55.3 NC_002512.2 + 185517 0.67 0.950234
Target:  5'- cGGGGGccugcCGcUCUUCGAGGGgGUgGCCu -3'
miRNA:   3'- -CUCCUa----GC-AGAAGCUCCUgCAgCGGc -5'
9345 3' -55.3 NC_002512.2 + 122944 0.67 0.946116
Target:  5'- cGAGGAggacucCGUCgaCGAGG-UGUCGCuCGa -3'
miRNA:   3'- -CUCCUa-----GCAGaaGCUCCuGCAGCG-GC- -5'
9345 3' -55.3 NC_002512.2 + 213915 0.68 0.941779
Target:  5'- gGGGaGAUCGaccgCggCGAGugcGACGUCGCCGc -3'
miRNA:   3'- -CUC-CUAGCa---GaaGCUC---CUGCAGCGGC- -5'
9345 3' -55.3 NC_002512.2 + 11731 0.68 0.937222
Target:  5'- -cGGGUCccgGUC-UCGAGGACGUauCCGg -3'
miRNA:   3'- cuCCUAG---CAGaAGCUCCUGCAgcGGC- -5'
9345 3' -55.3 NC_002512.2 + 156050 0.68 0.932443
Target:  5'- -cGGGUCGUCgacacggCGAGGcucauCGaCGCCGg -3'
miRNA:   3'- cuCCUAGCAGaa-----GCUCCu----GCaGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.