miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9345 5' -63.1 NC_002512.2 + 147823 0.66 0.746212
Target:  5'- -gCGACGGACgcgcgcgacuccuccCGCCGCGaccGCCGccGGCg -3'
miRNA:   3'- cgGCUGCCUGa--------------GCGGCGC---CGGC--UCGa -5'
9345 5' -63.1 NC_002512.2 + 182069 0.66 0.74532
Target:  5'- cGCCGAC---CUCaGCCGCGGCUccggggucuGGGCg -3'
miRNA:   3'- -CGGCUGccuGAG-CGGCGCCGG---------CUCGa -5'
9345 5' -63.1 NC_002512.2 + 150323 0.66 0.74532
Target:  5'- aCCGGCGG-CgaggaCGCCGCGGCggugaugGAGUg -3'
miRNA:   3'- cGGCUGCCuGa----GCGGCGCCGg------CUCGa -5'
9345 5' -63.1 NC_002512.2 + 149408 0.66 0.74532
Target:  5'- cUCGACGGGCcgCGaggggaCCGCGGCgggggCGGGCg -3'
miRNA:   3'- cGGCUGCCUGa-GC------GGCGCCG-----GCUCGa -5'
9345 5' -63.1 NC_002512.2 + 115212 0.66 0.74532
Target:  5'- cGCUGACGGACUCGgUGa--CCGAGa- -3'
miRNA:   3'- -CGGCUGCCUGAGCgGCgccGGCUCga -5'
9345 5' -63.1 NC_002512.2 + 92673 0.66 0.74532
Target:  5'- gGCCGcccgcgcCGGGCgCGCCGCccaCCGGGCg -3'
miRNA:   3'- -CGGCu------GCCUGaGCGGCGcc-GGCUCGa -5'
9345 5' -63.1 NC_002512.2 + 205496 0.66 0.74532
Target:  5'- --aGGCGGACgacggCGUCGCGGaggacgacgacuUCGAGCg -3'
miRNA:   3'- cggCUGCCUGa----GCGGCGCC------------GGCUCGa -5'
9345 5' -63.1 NC_002512.2 + 226718 0.66 0.739951
Target:  5'- -gCGACGGGag-GCCGCGGgcgacgacggcgggaCCGGGCUc -3'
miRNA:   3'- cgGCUGCCUgagCGGCGCC---------------GGCUCGA- -5'
9345 5' -63.1 NC_002512.2 + 127664 0.66 0.736355
Target:  5'- gGCCGGucgaGGGC-CGCUcCGGCCGcGGCg -3'
miRNA:   3'- -CGGCUg---CCUGaGCGGcGCCGGC-UCGa -5'
9345 5' -63.1 NC_002512.2 + 126328 0.66 0.736355
Target:  5'- -aCGACGaGGC-CGCCGCGuCCGGGaCg -3'
miRNA:   3'- cgGCUGC-CUGaGCGGCGCcGGCUC-Ga -5'
9345 5' -63.1 NC_002512.2 + 202207 0.66 0.736355
Target:  5'- cGCCGACGGAC---CCGCGGgauaCGGGg- -3'
miRNA:   3'- -CGGCUGCCUGagcGGCGCCg---GCUCga -5'
9345 5' -63.1 NC_002512.2 + 192179 0.66 0.736355
Target:  5'- cGCUGucCGucCUgCGCCGCGGCUGGGg- -3'
miRNA:   3'- -CGGCu-GCcuGA-GCGGCGCCGGCUCga -5'
9345 5' -63.1 NC_002512.2 + 217797 0.66 0.735455
Target:  5'- gGCUGGCGGAUcggcgUCGCCGUcccgaucgucgacGG-CGGGCg -3'
miRNA:   3'- -CGGCUGCCUG-----AGCGGCG-------------CCgGCUCGa -5'
9345 5' -63.1 NC_002512.2 + 165545 0.66 0.734553
Target:  5'- cGCCGucaucgaGCuGGACUgccaggucggcgaCGUgGUGGCCGGGCa -3'
miRNA:   3'- -CGGC-------UG-CCUGA-------------GCGgCGCCGGCUCGa -5'
9345 5' -63.1 NC_002512.2 + 222380 0.66 0.73094
Target:  5'- cCCGGCGGGCUCuGgcuccucauggagcgCCGCGGCUucGGCg -3'
miRNA:   3'- cGGCUGCCUGAG-C---------------GGCGCCGGc-UCGa -5'
9345 5' -63.1 NC_002512.2 + 215592 0.66 0.73094
Target:  5'- cCCGugGGAggacagcgUCGUccgggucugcggcagCGUGGCCGAGCUc -3'
miRNA:   3'- cGGCugCCUg-------AGCG---------------GCGCCGGCUCGA- -5'
9345 5' -63.1 NC_002512.2 + 227771 0.66 0.727314
Target:  5'- cGCuCGACGcccgcGACcgaGCCGCGGCCGuaccGCc -3'
miRNA:   3'- -CG-GCUGC-----CUGag-CGGCGCCGGCu---CGa -5'
9345 5' -63.1 NC_002512.2 + 218216 0.66 0.727314
Target:  5'- cGCCu-CGGGC-CGCgGCGGgCCGcGGCg -3'
miRNA:   3'- -CGGcuGCCUGaGCGgCGCC-GGC-UCGa -5'
9345 5' -63.1 NC_002512.2 + 212447 0.66 0.727314
Target:  5'- gGCCGGcCGcGAC-CGCCGCGaGgaGGGCa -3'
miRNA:   3'- -CGGCU-GC-CUGaGCGGCGC-CggCUCGa -5'
9345 5' -63.1 NC_002512.2 + 91139 0.66 0.727314
Target:  5'- uGUgGuCGGACgCGCUGCGGCacacccuggUGAGCa -3'
miRNA:   3'- -CGgCuGCCUGaGCGGCGCCG---------GCUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.