miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9346 5' -60.7 NC_002512.2 + 116538 0.66 0.824464
Target:  5'- gACGUgCCagcugcUGGGGAUgaacGGCCGCCuGuGCGa -3'
miRNA:   3'- gUGCA-GG------ACUCCUA----CCGGCGGuC-CGC- -5'
9346 5' -60.7 NC_002512.2 + 90490 0.66 0.824464
Target:  5'- gGCGUCCUcgacGGGAUcggGGCCgagGCC-GGCGg -3'
miRNA:   3'- gUGCAGGAc---UCCUA---CCGG---CGGuCCGC- -5'
9346 5' -60.7 NC_002512.2 + 191507 0.66 0.816364
Target:  5'- gCGCGcucccuUCCUacGAGGA-GGCCGUgggguCGGGCGa -3'
miRNA:   3'- -GUGC------AGGA--CUCCUaCCGGCG-----GUCCGC- -5'
9346 5' -60.7 NC_002512.2 + 228403 0.66 0.816364
Target:  5'- -cUGUCCgGGGGAcgGGgCGCUgggGGGCGg -3'
miRNA:   3'- guGCAGGaCUCCUa-CCgGCGG---UCCGC- -5'
9346 5' -60.7 NC_002512.2 + 222339 0.66 0.808947
Target:  5'- gGCGccUCCagGAGGAggaggagcggcacggGGCCGCCuuccccGGCGg -3'
miRNA:   3'- gUGC--AGGa-CUCCUa--------------CCGGCGGu-----CCGC- -5'
9346 5' -60.7 NC_002512.2 + 178685 0.66 0.808115
Target:  5'- aCACGUCC-GAGGcccgcagcgcGGCCGCCgcguugcuggccAGGCc -3'
miRNA:   3'- -GUGCAGGaCUCCua--------CCGGCGG------------UCCGc -5'
9346 5' -60.7 NC_002512.2 + 91533 0.66 0.808115
Target:  5'- gCugGUCCUgGAGGA-GGaCCaCCuGGCGc -3'
miRNA:   3'- -GugCAGGA-CUCCUaCC-GGcGGuCCGC- -5'
9346 5' -60.7 NC_002512.2 + 221232 0.66 0.799724
Target:  5'- aACGgCUUGAGGucgaucGGCCGgCCGcGGCGg -3'
miRNA:   3'- gUGCaGGACUCCua----CCGGC-GGU-CCGC- -5'
9346 5' -60.7 NC_002512.2 + 196944 0.66 0.791198
Target:  5'- uCACGUCCauc--GUGGCCGCCaaccaGGGCa -3'
miRNA:   3'- -GUGCAGGacuccUACCGGCGG-----UCCGc -5'
9346 5' -60.7 NC_002512.2 + 226710 0.66 0.791198
Target:  5'- gGCGUCgaGcgacGGGA-GGCCGC-GGGCGa -3'
miRNA:   3'- gUGCAGgaC----UCCUaCCGGCGgUCCGC- -5'
9346 5' -60.7 NC_002512.2 + 227657 0.66 0.791198
Target:  5'- cCGgGUCCgGAGGAagagcggcgGcGCCGCC-GGCGa -3'
miRNA:   3'- -GUgCAGGaCUCCUa--------C-CGGCGGuCCGC- -5'
9346 5' -60.7 NC_002512.2 + 199491 0.66 0.782543
Target:  5'- -cCGUCCgucagggccgcGAGGAUcaggucgaGGUCGUCGGGCGa -3'
miRNA:   3'- guGCAGGa----------CUCCUA--------CCGGCGGUCCGC- -5'
9346 5' -60.7 NC_002512.2 + 94394 0.66 0.782543
Target:  5'- cCAUGaUCUUGAGGAcGGCgGUCuuGGCGc -3'
miRNA:   3'- -GUGC-AGGACUCCUaCCGgCGGu-CCGC- -5'
9346 5' -60.7 NC_002512.2 + 92061 0.66 0.781671
Target:  5'- gACGcCCUGGaacgcuacgagacGGAcGGCCGCCGGacgcGCGg -3'
miRNA:   3'- gUGCaGGACU-------------CCUaCCGGCGGUC----CGC- -5'
9346 5' -60.7 NC_002512.2 + 77550 0.67 0.764881
Target:  5'- cUACGUCgCgGAcGGcgGGUCGCCcacGGGCGu -3'
miRNA:   3'- -GUGCAG-GaCU-CCuaCCGGCGG---UCCGC- -5'
9346 5' -60.7 NC_002512.2 + 191341 0.67 0.764881
Target:  5'- -cCGUCCgcgacGGGGGUaGGUCGCCGcGCGa -3'
miRNA:   3'- guGCAGGa----CUCCUA-CCGGCGGUcCGC- -5'
9346 5' -60.7 NC_002512.2 + 102460 0.67 0.764881
Target:  5'- gGCGUCgCgGAGGAgGGCgCGCCcgucgcgguGGCGg -3'
miRNA:   3'- gUGCAG-GaCUCCUaCCG-GCGGu--------CCGC- -5'
9346 5' -60.7 NC_002512.2 + 207168 0.67 0.764881
Target:  5'- cCGCGguagCUGuuGAUGuGCCGCCGgGGCGa -3'
miRNA:   3'- -GUGCag--GACucCUAC-CGGCGGU-CCGC- -5'
9346 5' -60.7 NC_002512.2 + 169525 0.67 0.755889
Target:  5'- aCGCGUCCagcucGAacGGGUcccGGCUGCCcGGCGg -3'
miRNA:   3'- -GUGCAGGa----CU--CCUA---CCGGCGGuCCGC- -5'
9346 5' -60.7 NC_002512.2 + 227354 0.67 0.755889
Target:  5'- gACGggaCgGAGGAggcccggGGCCGCC-GGCGu -3'
miRNA:   3'- gUGCag-GaCUCCUa------CCGGCGGuCCGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.