miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9347 3' -55.2 NC_002512.2 + 215489 0.66 0.979137
Target:  5'- uGGCGccuGCUcuacuUCGCCUCCGUGGUcGGu -3'
miRNA:   3'- cCUGCucuCGG-----AGUGGAGGCACUA-CC- -5'
9347 3' -55.2 NC_002512.2 + 195636 0.66 0.979137
Target:  5'- gGGACGGGAcGaCCggCGgCUCCGUGGa-- -3'
miRNA:   3'- -CCUGCUCU-C-GGa-GUgGAGGCACUacc -5'
9347 3' -55.2 NC_002512.2 + 150059 0.66 0.979137
Target:  5'- gGGGCGGGAgggggggaccGCCgcCGCCgCCGUcgggcGAUGGa -3'
miRNA:   3'- -CCUGCUCU----------CGGa-GUGGaGGCA-----CUACC- -5'
9347 3' -55.2 NC_002512.2 + 137136 0.66 0.971866
Target:  5'- cGACGuaucgguGAGCCUgGCCUCCaUGAc-- -3'
miRNA:   3'- cCUGCu------CUCGGAgUGGAGGcACUacc -5'
9347 3' -55.2 NC_002512.2 + 185968 0.66 0.971866
Target:  5'- uGGAgcuCGAGggcaacGGCCUguCCcugucgCCGUGGUGGg -3'
miRNA:   3'- -CCU---GCUC------UCGGAguGGa-----GGCACUACC- -5'
9347 3' -55.2 NC_002512.2 + 220229 0.67 0.96908
Target:  5'- gGGACGAGugcGCC-CGCCUggCCGacAUGGu -3'
miRNA:   3'- -CCUGCUCu--CGGaGUGGA--GGCacUACC- -5'
9347 3' -55.2 NC_002512.2 + 227433 0.67 0.966102
Target:  5'- cGGGCGcGGGCCgcggUCACCUUCGcgcUGccGGg -3'
miRNA:   3'- -CCUGCuCUCGG----AGUGGAGGC---ACuaCC- -5'
9347 3' -55.2 NC_002512.2 + 195789 0.67 0.962928
Target:  5'- uGGACGuGGGCgUgUugCUCCGcUGcgGGg -3'
miRNA:   3'- -CCUGCuCUCGgA-GugGAGGC-ACuaCC- -5'
9347 3' -55.2 NC_002512.2 + 214288 0.68 0.943957
Target:  5'- uGGccCGAGGGCUUCACCUUCGUcuucGGc -3'
miRNA:   3'- -CCu-GCUCUCGGAGUGGAGGCAcua-CC- -5'
9347 3' -55.2 NC_002512.2 + 193091 0.68 0.939519
Target:  5'- cGGCGAGuGCCgcuUCAUCUCCGcGccGGa -3'
miRNA:   3'- cCUGCUCuCGG---AGUGGAGGCaCuaCC- -5'
9347 3' -55.2 NC_002512.2 + 148444 0.69 0.919557
Target:  5'- aGGACGGGGGCCggGCCccCCGcggGAcGGa -3'
miRNA:   3'- -CCUGCUCUCGGagUGGa-GGCa--CUaCC- -5'
9347 3' -55.2 NC_002512.2 + 121399 0.7 0.876197
Target:  5'- cGGACG-GAGCCgCGCCUggCGUGGaGGg -3'
miRNA:   3'- -CCUGCuCUCGGaGUGGAg-GCACUaCC- -5'
9347 3' -55.2 NC_002512.2 + 113150 0.71 0.814719
Target:  5'- gGGGCGccGGCCUCGCCgcggCCGgGcgGGa -3'
miRNA:   3'- -CCUGCucUCGGAGUGGa---GGCaCuaCC- -5'
9347 3' -55.2 NC_002512.2 + 145758 0.73 0.761988
Target:  5'- cGGACGAGGaCCUCACCgagacgCUGUGGccgcgGGa -3'
miRNA:   3'- -CCUGCUCUcGGAGUGGa-----GGCACUa----CC- -5'
9347 3' -55.2 NC_002512.2 + 207748 0.73 0.761988
Target:  5'- gGGACGcuccgggguGGAGCC--GCCgCCGUGGUGGu -3'
miRNA:   3'- -CCUGC---------UCUCGGagUGGaGGCACUACC- -5'
9347 3' -55.2 NC_002512.2 + 221340 0.73 0.752779
Target:  5'- uGGAucCGAGAccgcgGCCUCGCCgcUCCGUGucgGUGGu -3'
miRNA:   3'- -CCU--GCUCU-----CGGAGUGG--AGGCAC---UACC- -5'
9347 3' -55.2 NC_002512.2 + 185243 0.74 0.706381
Target:  5'- uGGGCGAGAGCCUCgACCgcggucucuacucggUCGUcgccauGAUGGa -3'
miRNA:   3'- -CCUGCUCUCGGAG-UGGa--------------GGCA------CUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.