miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9347 5' -51.8 NC_002512.2 + 202956 0.66 0.996475
Target:  5'- -gCCGGUACGAGGucaguuuCAGGCGccGGUa -3'
miRNA:   3'- caGGUCGUGCUUCuu-----GUCCGUcuUCG- -5'
9347 5' -51.8 NC_002512.2 + 196097 0.66 0.996475
Target:  5'- cUCCucugcuGCAUGucGAugAaGCAGAGGCg -3'
miRNA:   3'- cAGGu-----CGUGCuuCUugUcCGUCUUCG- -5'
9347 5' -51.8 NC_002512.2 + 132903 0.66 0.996475
Target:  5'- -cCCGGCgacGCGAuacucucGCGGGCGGAAGa -3'
miRNA:   3'- caGGUCG---UGCUucu----UGUCCGUCUUCg -5'
9347 5' -51.8 NC_002512.2 + 122187 0.66 0.996475
Target:  5'- -cCCAaCACGgcGGu--GGCGGAGGCg -3'
miRNA:   3'- caGGUcGUGCuuCUuguCCGUCUUCG- -5'
9347 5' -51.8 NC_002512.2 + 217079 0.66 0.996475
Target:  5'- uGUUCAGC-CGcccGAGCAuccGCAGggGCa -3'
miRNA:   3'- -CAGGUCGuGCuu-CUUGUc--CGUCuuCG- -5'
9347 5' -51.8 NC_002512.2 + 156454 0.66 0.996475
Target:  5'- cUCCgggGGCgGCGggGGACucggGGGCGGcGGGCu -3'
miRNA:   3'- cAGG---UCG-UGCuuCUUG----UCCGUC-UUCG- -5'
9347 5' -51.8 NC_002512.2 + 217817 0.66 0.996475
Target:  5'- cGUCCcgaucGUcgACGgcGGGCGguucGGCAGAGGCg -3'
miRNA:   3'- -CAGGu----CG--UGCuuCUUGU----CCGUCUUCG- -5'
9347 5' -51.8 NC_002512.2 + 103450 0.66 0.996418
Target:  5'- gGUCCgAGCGCGGguccgAGGACGcggcucgggucucGGCGGcGGCc -3'
miRNA:   3'- -CAGG-UCGUGCU-----UCUUGU-------------CCGUCuUCG- -5'
9347 5' -51.8 NC_002512.2 + 91781 0.66 0.995877
Target:  5'- --aCAGCAaguCGAAGAuCGGGCuGGAGg -3'
miRNA:   3'- cagGUCGU---GCUUCUuGUCCGuCUUCg -5'
9347 5' -51.8 NC_002512.2 + 95455 0.66 0.995877
Target:  5'- -gCCAGgGCGAGGAACccccuGGGCAc--GCa -3'
miRNA:   3'- caGGUCgUGCUUCUUG-----UCCGUcuuCG- -5'
9347 5' -51.8 NC_002512.2 + 114194 0.66 0.995877
Target:  5'- cGUCgGGCccgGCGGccauGAGgAGGCGGAAGa -3'
miRNA:   3'- -CAGgUCG---UGCUu---CUUgUCCGUCUUCg -5'
9347 5' -51.8 NC_002512.2 + 227156 0.66 0.995877
Target:  5'- --aCAGCAgGAgcaGGAAC-GGCAGGacgAGCa -3'
miRNA:   3'- cagGUCGUgCU---UCUUGuCCGUCU---UCG- -5'
9347 5' -51.8 NC_002512.2 + 137235 0.66 0.995198
Target:  5'- -cCCGGUcccgACGAGGAcACcGGCGGcGAGCg -3'
miRNA:   3'- caGGUCG----UGCUUCU-UGuCCGUC-UUCG- -5'
9347 5' -51.8 NC_002512.2 + 224349 0.66 0.995198
Target:  5'- -gCCGcGC-CGggGucGCGGGCGGGAGa -3'
miRNA:   3'- caGGU-CGuGCuuCu-UGUCCGUCUUCg -5'
9347 5' -51.8 NC_002512.2 + 123155 0.66 0.995198
Target:  5'- -gCCGGgGcCGAGGAgGCGGaCAGGAGCg -3'
miRNA:   3'- caGGUCgU-GCUUCU-UGUCcGUCUUCG- -5'
9347 5' -51.8 NC_002512.2 + 108980 0.66 0.995198
Target:  5'- -gCCAGCGaacUGAAGaAGCGGGCgacGGAGGa -3'
miRNA:   3'- caGGUCGU---GCUUC-UUGUCCG---UCUUCg -5'
9347 5' -51.8 NC_002512.2 + 103684 0.66 0.995198
Target:  5'- cGUCgCAGaggGCGgcGGACGcGGCGGGAGg -3'
miRNA:   3'- -CAG-GUCg--UGCuuCUUGU-CCGUCUUCg -5'
9347 5' -51.8 NC_002512.2 + 94634 0.66 0.995198
Target:  5'- cGUCgAGCGCGGcgcGGACGacGGCcucGAGGCg -3'
miRNA:   3'- -CAGgUCGUGCUu--CUUGU--CCGu--CUUCG- -5'
9347 5' -51.8 NC_002512.2 + 91671 0.66 0.995198
Target:  5'- cUCCAGCcgcuACGAGauGAACacgAGGCGGAucguggAGCu -3'
miRNA:   3'- cAGGUCG----UGCUU--CUUG---UCCGUCU------UCG- -5'
9347 5' -51.8 NC_002512.2 + 180151 0.66 0.995198
Target:  5'- gGUCCAGgACGGccuccgucccGAGCAGGUAcGAcGCg -3'
miRNA:   3'- -CAGGUCgUGCUu---------CUUGUCCGU-CUuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.