miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9348 3' -55.1 NC_002512.2 + 124715 0.66 0.9807
Target:  5'- ---cUGGGGcGCGuGCACCUguUCcCCGCCg -3'
miRNA:   3'- ccuuGCCCC-UGU-CGUGGA--AGaGGUGG- -5'
9348 3' -55.1 NC_002512.2 + 158993 0.66 0.9807
Target:  5'- cGGGGCGGaGGcgGCGGCcCCggCgUCCGCg -3'
miRNA:   3'- -CCUUGCC-CC--UGUCGuGGaaG-AGGUGg -5'
9348 3' -55.1 NC_002512.2 + 149381 0.66 0.980494
Target:  5'- gGGcGCGGGGAC-GCAggacuCCggCUCCucgacggGCCg -3'
miRNA:   3'- -CCuUGCCCCUGuCGU-----GGaaGAGG-------UGG- -5'
9348 3' -55.1 NC_002512.2 + 98819 0.66 0.980077
Target:  5'- cGGAGCGacggaucggccuccGGcGCGGCGCCgucCUCCcCCg -3'
miRNA:   3'- -CCUUGC--------------CCcUGUCGUGGaa-GAGGuGG- -5'
9348 3' -55.1 NC_002512.2 + 205227 0.66 0.978564
Target:  5'- cGGGACGgagaucGGGACGGaCGacgucgUCUUC-CCGCCg -3'
miRNA:   3'- -CCUUGC------CCCUGUC-GU------GGAAGaGGUGG- -5'
9348 3' -55.1 NC_002512.2 + 196802 0.66 0.978564
Target:  5'- -cAGCuGGGcGACAGCcuccaguCCUUCUUCugCg -3'
miRNA:   3'- ccUUG-CCC-CUGUCGu------GGAAGAGGugG- -5'
9348 3' -55.1 NC_002512.2 + 194075 0.66 0.978564
Target:  5'- -aGACGGGGACGuaCGCCUUCgcgaaCGCg -3'
miRNA:   3'- ccUUGCCCCUGUc-GUGGAAGag---GUGg -5'
9348 3' -55.1 NC_002512.2 + 193573 0.66 0.978564
Target:  5'- aGGggUGGGGAUcuCAUC--CUCCGCg -3'
miRNA:   3'- -CCuuGCCCCUGucGUGGaaGAGGUGg -5'
9348 3' -55.1 NC_002512.2 + 170812 0.66 0.978564
Target:  5'- gGGAgcgACGGGGGCGGCAgCggCggCAgCg -3'
miRNA:   3'- -CCU---UGCCCCUGUCGUgGaaGagGUgG- -5'
9348 3' -55.1 NC_002512.2 + 129169 0.66 0.978341
Target:  5'- aGGAcuaccugacguucACGGGGAC-GCugCggaggaggCCGCCg -3'
miRNA:   3'- -CCU-------------UGCCCCUGuCGugGaaga----GGUGG- -5'
9348 3' -55.1 NC_002512.2 + 127718 0.66 0.97789
Target:  5'- aGGGCGGGGAagcgaucgacgaccCAGCGCggUCgCgGCCg -3'
miRNA:   3'- cCUUGCCCCU--------------GUCGUGgaAGaGgUGG- -5'
9348 3' -55.1 NC_002512.2 + 132181 0.66 0.976257
Target:  5'- uGAGCGGGauaGACGGuCAgCUgCUCgACCg -3'
miRNA:   3'- cCUUGCCC---CUGUC-GUgGAaGAGgUGG- -5'
9348 3' -55.1 NC_002512.2 + 113269 0.66 0.976257
Target:  5'- gGGGGCGgccggcGGGGCAGCcgcggcggGCCU-C-CCGCCc -3'
miRNA:   3'- -CCUUGC------CCCUGUCG--------UGGAaGaGGUGG- -5'
9348 3' -55.1 NC_002512.2 + 224541 0.66 0.976257
Target:  5'- aGGuccCGGGGACcaugGCCUUCcCCAUCg -3'
miRNA:   3'- -CCuu-GCCCCUGucg-UGGAAGaGGUGG- -5'
9348 3' -55.1 NC_002512.2 + 177195 0.66 0.976017
Target:  5'- gGGGACgucgucuGGGGAucCAGUuUCUUCaCCACCg -3'
miRNA:   3'- -CCUUG-------CCCCU--GUCGuGGAAGaGGUGG- -5'
9348 3' -55.1 NC_002512.2 + 225402 0.66 0.97403
Target:  5'- ---uCGGGGACGGCGCCggggUCggggucggguuggggCCgacGCCg -3'
miRNA:   3'- ccuuGCCCCUGUCGUGGa---AGa--------------GG---UGG- -5'
9348 3' -55.1 NC_002512.2 + 227356 0.66 0.973774
Target:  5'- cGGGACGGaGGA-GGC-CCggggCCGCCg -3'
miRNA:   3'- -CCUUGCC-CCUgUCGuGGaagaGGUGG- -5'
9348 3' -55.1 NC_002512.2 + 103335 0.66 0.973516
Target:  5'- cGGGCGGcguagcccggggcGGACGGCACggUCgaggucaggCCGCCg -3'
miRNA:   3'- cCUUGCC-------------CCUGUCGUGgaAGa--------GGUGG- -5'
9348 3' -55.1 NC_002512.2 + 89001 0.66 0.973516
Target:  5'- cGGAgcGCGGGGacgucggGCAGCGCgaUCcgagcgaacUCCACg -3'
miRNA:   3'- -CCU--UGCCCC-------UGUCGUGgaAG---------AGGUGg -5'
9348 3' -55.1 NC_002512.2 + 224044 0.66 0.972196
Target:  5'- cGGGGCcgccGGGGACGacucgucgggcgucuGCgACC-UCUCCACg -3'
miRNA:   3'- -CCUUG----CCCCUGU---------------CG-UGGaAGAGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.