miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9348 5' -54.7 NC_002512.2 + 191474 0.66 0.982493
Target:  5'- cCGAGUACGAGgcGCcGgacagCgCggcgacCGGCGCg -3'
miRNA:   3'- -GCUCAUGCUCuaCGaCa----G-Ga-----GCCGCG- -5'
9348 5' -54.7 NC_002512.2 + 124252 0.66 0.982493
Target:  5'- gGAGUACGAcacGGUGCac-CCgacggCGGCGUc -3'
miRNA:   3'- gCUCAUGCU---CUACGacaGGa----GCCGCG- -5'
9348 5' -54.7 NC_002512.2 + 167734 0.66 0.982493
Target:  5'- uCGAGcgggGCGAGGaGCUGccgggCgUCGGCGa -3'
miRNA:   3'- -GCUCa---UGCUCUaCGACa----GgAGCCGCg -5'
9348 5' -54.7 NC_002512.2 + 20741 0.66 0.980494
Target:  5'- gGAGUGCGAuauUGCcGUUaaCGGUGCa -3'
miRNA:   3'- gCUCAUGCUcu-ACGaCAGgaGCCGCG- -5'
9348 5' -54.7 NC_002512.2 + 156612 0.66 0.977416
Target:  5'- --uGUACGAGGaggcGCUGUCCgacucgaaacggcCGGUGCc -3'
miRNA:   3'- gcuCAUGCUCUa---CGACAGGa------------GCCGCG- -5'
9348 5' -54.7 NC_002512.2 + 213527 0.66 0.975993
Target:  5'- cCGGGU-CGGGGUGC---CCUCGGaGCg -3'
miRNA:   3'- -GCUCAuGCUCUACGacaGGAGCCgCG- -5'
9348 5' -54.7 NC_002512.2 + 93041 0.66 0.975993
Target:  5'- gGAG-GCGGGAcggcUGCUG-CCccaGGCGCu -3'
miRNA:   3'- gCUCaUGCUCU----ACGACaGGag-CCGCG- -5'
9348 5' -54.7 NC_002512.2 + 219494 0.66 0.975993
Target:  5'- gCGGGUcagACGAgGAUGCUGg-C-CGGCGUu -3'
miRNA:   3'- -GCUCA---UGCU-CUACGACagGaGCCGCG- -5'
9348 5' -54.7 NC_002512.2 + 207603 0.66 0.975258
Target:  5'- gCGAcgGCG-GcgGCUGcugcggcggcgaguUCCUCGGCGUg -3'
miRNA:   3'- -GCUcaUGCuCuaCGAC--------------AGGAGCCGCG- -5'
9348 5' -54.7 NC_002512.2 + 156516 0.66 0.973477
Target:  5'- uGGGcgGCGGGgcGCggggGUCCggCGGCGg -3'
miRNA:   3'- gCUCa-UGCUCuaCGa---CAGGa-GCCGCg -5'
9348 5' -54.7 NC_002512.2 + 156549 0.66 0.973477
Target:  5'- aCGuGUACGcGAcgcgggagagccUGCUG-CgCUCGGUGCg -3'
miRNA:   3'- -GCuCAUGCuCU------------ACGACaG-GAGCCGCG- -5'
9348 5' -54.7 NC_002512.2 + 35956 0.66 0.973477
Target:  5'- -cGGUACGAGAUGUUGgggacgagaCCgagacaggacuUCGGUGCc -3'
miRNA:   3'- gcUCAUGCUCUACGACa--------GG-----------AGCCGCG- -5'
9348 5' -54.7 NC_002512.2 + 122823 0.66 0.973477
Target:  5'- cCGAGaACGAGAUGgaGgCCgcgaCGGuCGCc -3'
miRNA:   3'- -GCUCaUGCUCUACgaCaGGa---GCC-GCG- -5'
9348 5' -54.7 NC_002512.2 + 191583 0.67 0.971879
Target:  5'- ---uUACGAGAgccUGUUcggucgcgcggucgaGUCCUCGGCGUc -3'
miRNA:   3'- gcucAUGCUCU---ACGA---------------CAGGAGCCGCG- -5'
9348 5' -54.7 NC_002512.2 + 102211 0.67 0.970775
Target:  5'- ----cGCGGcGAUcGCgucgacgagGUCCUCGGCGCu -3'
miRNA:   3'- gcucaUGCU-CUA-CGa--------CAGGAGCCGCG- -5'
9348 5' -54.7 NC_002512.2 + 152969 0.67 0.970775
Target:  5'- uCGGGUcgGCGGGA-GCgGUCCccggucgggUCGGCGg -3'
miRNA:   3'- -GCUCA--UGCUCUaCGaCAGG---------AGCCGCg -5'
9348 5' -54.7 NC_002512.2 + 153019 0.67 0.970775
Target:  5'- uCGGGUcgGCGGGA-GCgGUCCccggucgggUCGGCGg -3'
miRNA:   3'- -GCUCA--UGCUCUaCGaCAGG---------AGCCGCg -5'
9348 5' -54.7 NC_002512.2 + 156333 0.67 0.970495
Target:  5'- uCGAGcggcUGCGGGAccUGCagaugcaccUGUCCacccacgUCGGCGCc -3'
miRNA:   3'- -GCUC----AUGCUCU--ACG---------ACAGG-------AGCCGCG- -5'
9348 5' -54.7 NC_002512.2 + 89517 0.67 0.967882
Target:  5'- uCGAagACcAGGUGCcgGUUgUCGGCGCg -3'
miRNA:   3'- -GCUcaUGcUCUACGa-CAGgAGCCGCG- -5'
9348 5' -54.7 NC_002512.2 + 35094 0.67 0.967882
Target:  5'- cCGG--ACGuuuGAUGUg--CCUCGGCGCa -3'
miRNA:   3'- -GCUcaUGCu--CUACGacaGGAGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.