miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9349 3' -63.3 NC_002512.2 + 184500 0.66 0.674103
Target:  5'- aGCGacaGUCCCGGccCGCGUCCucgucgCAGCAg -3'
miRNA:   3'- -CGUg--CGGGGCCa-GCGCGGGca----GUCGU- -5'
9349 3' -63.3 NC_002512.2 + 178560 0.66 0.673164
Target:  5'- uCACGaUCCGGUuguggugCGCGUCCGUCAGg- -3'
miRNA:   3'- cGUGCgGGGCCA-------GCGCGGGCAGUCgu -5'
9349 3' -63.3 NC_002512.2 + 194926 0.67 0.664704
Target:  5'- aGC-CGgaCCCGGUCGCGgccgcuccgcucCCCGUCGccGCGa -3'
miRNA:   3'- -CGuGCg-GGGCCAGCGC------------GGGCAGU--CGU- -5'
9349 3' -63.3 NC_002512.2 + 135814 0.67 0.664704
Target:  5'- -gACGCCgaCGGUcccguucccgcCGCGCCCGUCGucGCc -3'
miRNA:   3'- cgUGCGGg-GCCA-----------GCGCGGGCAGU--CGu -5'
9349 3' -63.3 NC_002512.2 + 145023 0.67 0.664704
Target:  5'- cGCuACGCCCgGGcgCGCaacGCCCGggaCGGCc -3'
miRNA:   3'- -CG-UGCGGGgCCa-GCG---CGGGCa--GUCGu -5'
9349 3' -63.3 NC_002512.2 + 143458 0.67 0.663763
Target:  5'- cCGCGCCCC-GUC-CGCUCGUCAucucucgGCGa -3'
miRNA:   3'- cGUGCGGGGcCAGcGCGGGCAGU-------CGU- -5'
9349 3' -63.3 NC_002512.2 + 181547 0.67 0.66188
Target:  5'- cGCACGCCCgCGcgauguccucguucGUgGgGUCCGUCuGCGg -3'
miRNA:   3'- -CGUGCGGG-GC--------------CAgCgCGGGCAGuCGU- -5'
9349 3' -63.3 NC_002512.2 + 217403 0.67 0.655283
Target:  5'- gGCAgGCCuuGaugaagcgcacGUCGUucCCCGUCAGCAc -3'
miRNA:   3'- -CGUgCGGggC-----------CAGCGc-GGGCAGUCGU- -5'
9349 3' -63.3 NC_002512.2 + 204798 0.67 0.655283
Target:  5'- -gACGCCCgggaGGUcCGCGuCCCGggggcgCGGCGg -3'
miRNA:   3'- cgUGCGGGg---CCA-GCGC-GGGCa-----GUCGU- -5'
9349 3' -63.3 NC_002512.2 + 223011 0.67 0.65434
Target:  5'- gGCACGgCCCagggacgGGUCGuCGCCCacucCGGCGa -3'
miRNA:   3'- -CGUGCgGGG-------CCAGC-GCGGGca--GUCGU- -5'
9349 3' -63.3 NC_002512.2 + 132000 0.67 0.65434
Target:  5'- gGC-CGCCCCGG--GCGCCgGggggaccUCGGCGg -3'
miRNA:   3'- -CGuGCGGGGCCagCGCGGgC-------AGUCGU- -5'
9349 3' -63.3 NC_002512.2 + 187819 0.67 0.652453
Target:  5'- ---gGCCCUGGUCGUccagaccguccggaGCCaguuCGUCGGCAa -3'
miRNA:   3'- cgugCGGGGCCAGCG--------------CGG----GCAGUCGU- -5'
9349 3' -63.3 NC_002512.2 + 158904 0.67 0.645846
Target:  5'- --cCGUCCuCGGUCGCGgCCGaguacggcuUCGGCGg -3'
miRNA:   3'- cguGCGGG-GCCAGCGCgGGC---------AGUCGU- -5'
9349 3' -63.3 NC_002512.2 + 189339 0.67 0.6364
Target:  5'- cGCGCGUCUcgcgCGGUgGCGUCUGUgAGUg -3'
miRNA:   3'- -CGUGCGGG----GCCAgCGCGGGCAgUCGu -5'
9349 3' -63.3 NC_002512.2 + 136259 0.67 0.6364
Target:  5'- -aACGCCaCCGagcaCGCGCCCGUCcaacGGCc -3'
miRNA:   3'- cgUGCGG-GGCca--GCGCGGGCAG----UCGu -5'
9349 3' -63.3 NC_002512.2 + 101689 0.67 0.617505
Target:  5'- --cCGuCCCCGGUCccgccgGCgGCCCGcUCGGCGa -3'
miRNA:   3'- cguGC-GGGGCCAG------CG-CGGGC-AGUCGU- -5'
9349 3' -63.3 NC_002512.2 + 164423 0.68 0.608069
Target:  5'- cGCACGCCaugcaggucgCCGGgaagccgcUCgGCGCCC-UCGGCGg -3'
miRNA:   3'- -CGUGCGG----------GGCC--------AG-CGCGGGcAGUCGU- -5'
9349 3' -63.3 NC_002512.2 + 133588 0.68 0.608069
Target:  5'- gGCcCGCCCgCGGcggCG-GCCCG-CGGCAg -3'
miRNA:   3'- -CGuGCGGG-GCCa--GCgCGGGCaGUCGU- -5'
9349 3' -63.3 NC_002512.2 + 223536 0.68 0.604298
Target:  5'- aCGCGCCCgCGGcccgcggcccCGCGCCCGguccccccgcgggCGGCGg -3'
miRNA:   3'- cGUGCGGG-GCCa---------GCGCGGGCa------------GUCGU- -5'
9349 3' -63.3 NC_002512.2 + 136497 0.68 0.598648
Target:  5'- uGCACGCgUUCGG-CGCGCCCuG-CGGCc -3'
miRNA:   3'- -CGUGCG-GGGCCaGCGCGGG-CaGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.