miRNA display CGI


Results 1 - 20 of 29 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9349 5' -55.7 NC_002512.2 + 221587 0.81 0.30808
Target:  5'- cUCCGUCGACccggagggGGGUCGGUGgacggcgaggaGGGAGCGGg -3'
miRNA:   3'- -AGGUAGCUG--------UCCAGCCAC-----------CCCUUGUC- -5'
9349 5' -55.7 NC_002512.2 + 227099 0.75 0.572301
Target:  5'- gCCGcCGGcCGGGUCGGgcucagacgGGGGAGCGGg -3'
miRNA:   3'- aGGUaGCU-GUCCAGCCa--------CCCCUUGUC- -5'
9349 5' -55.7 NC_002512.2 + 189701 0.74 0.628568
Target:  5'- gUCGUCGACguccgggggaugucGGGgCGGUGGGGAgGCAGg -3'
miRNA:   3'- aGGUAGCUG--------------UCCaGCCACCCCU-UGUC- -5'
9349 5' -55.7 NC_002512.2 + 153172 0.73 0.710241
Target:  5'- aCCuacggggCGGCGGGcagCGGUGGGGAggGCGGc -3'
miRNA:   3'- aGGua-----GCUGUCCa--GCCACCCCU--UGUC- -5'
9349 5' -55.7 NC_002512.2 + 160725 0.72 0.738947
Target:  5'- -aCAUCGGgGGGgauuUCGG-GGGGAACGGc -3'
miRNA:   3'- agGUAGCUgUCC----AGCCaCCCCUUGUC- -5'
9349 5' -55.7 NC_002512.2 + 100057 0.72 0.752089
Target:  5'- cUCCAUCGcgacgggggccGCGGGcCGGggacggagcggucaGGGGAACAGg -3'
miRNA:   3'- -AGGUAGC-----------UGUCCaGCCa-------------CCCCUUGUC- -5'
9349 5' -55.7 NC_002512.2 + 228405 0.7 0.843693
Target:  5'- gUCCGgggGACGGGgCGcUGGGGGGCGGg -3'
miRNA:   3'- -AGGUag-CUGUCCaGCcACCCCUUGUC- -5'
9349 5' -55.7 NC_002512.2 + 205710 0.7 0.843693
Target:  5'- aCCggCGACAGGcggcggcacaagUCGGggucGGGGggUAGg -3'
miRNA:   3'- aGGuaGCUGUCC------------AGCCa---CCCCuuGUC- -5'
9349 5' -55.7 NC_002512.2 + 149427 0.7 0.858963
Target:  5'- aCCG-CGGCGGGggCGGgcgcgGGGGGAgAGg -3'
miRNA:   3'- aGGUaGCUGUCCa-GCCa----CCCCUUgUC- -5'
9349 5' -55.7 NC_002512.2 + 209874 0.69 0.866312
Target:  5'- -aCGcCGGCuacuacguGGUCGGUcgcGGGGAGCAGg -3'
miRNA:   3'- agGUaGCUGu-------CCAGCCA---CCCCUUGUC- -5'
9349 5' -55.7 NC_002512.2 + 168132 0.69 0.873464
Target:  5'- cCCGgccgCGGCgAGGggcugggGGUGGGGGGCGGa -3'
miRNA:   3'- aGGUa---GCUG-UCCag-----CCACCCCUUGUC- -5'
9349 5' -55.7 NC_002512.2 + 160663 0.69 0.880412
Target:  5'- aCCGcggCGACGGGgauUCGG-GGGGGACu- -3'
miRNA:   3'- aGGUa--GCUGUCC---AGCCaCCCCUUGuc -5'
9349 5' -55.7 NC_002512.2 + 221299 0.69 0.887154
Target:  5'- -----aGGCcgGGGUCGGcGGGGAGCGGg -3'
miRNA:   3'- agguagCUG--UCCAGCCaCCCCUUGUC- -5'
9349 5' -55.7 NC_002512.2 + 207716 0.68 0.899377
Target:  5'- gCCAUCGcCAGcgccgaguccaucGUCGGcGGGGGACGc -3'
miRNA:   3'- aGGUAGCuGUC-------------CAGCCaCCCCUUGUc -5'
9349 5' -55.7 NC_002512.2 + 90517 0.68 0.911395
Target:  5'- gCCGgcggcggaCGACGGGaacgCGGUGGGGGaggaggaGCGGg -3'
miRNA:   3'- aGGUa-------GCUGUCCa---GCCACCCCU-------UGUC- -5'
9349 5' -55.7 NC_002512.2 + 132453 0.68 0.911973
Target:  5'- cCCggCGGCGGGUCc--GGGGAGCGc -3'
miRNA:   3'- aGGuaGCUGUCCAGccaCCCCUUGUc -5'
9349 5' -55.7 NC_002512.2 + 150047 0.68 0.923059
Target:  5'- gCCGgggaCGACGGGgCGGgaggGGGGGACc- -3'
miRNA:   3'- aGGUa---GCUGUCCaGCCa---CCCCUUGuc -5'
9349 5' -55.7 NC_002512.2 + 115256 0.68 0.928265
Target:  5'- aCCuacaCGAUAGG-CGGcGGGGAGCGc -3'
miRNA:   3'- aGGua--GCUGUCCaGCCaCCCCUUGUc -5'
9349 5' -55.7 NC_002512.2 + 191278 0.67 0.933248
Target:  5'- -gCggCGACGGGgagggcggCGGggcGGGGGACGGg -3'
miRNA:   3'- agGuaGCUGUCCa-------GCCa--CCCCUUGUC- -5'
9349 5' -55.7 NC_002512.2 + 175592 0.66 0.954829
Target:  5'- -aCGUCGccguGCGGGUCcuucgGGUGGGGugcCAGg -3'
miRNA:   3'- agGUAGC----UGUCCAG-----CCACCCCuu-GUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.