miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9350 3' -55.2 NC_002512.2 + 113070 0.67 0.954977
Target:  5'- -cGAGGGCCAg-GCGGUCGacgaugCGCACGu -3'
miRNA:   3'- acCUCUCGGUgaUGCUAGUg-----GCGUGC- -5'
9350 3' -55.2 NC_002512.2 + 191467 0.67 0.951073
Target:  5'- aGGuGGGCCGagUACGAggCGCCGgACa -3'
miRNA:   3'- aCCuCUCGGUg-AUGCUa-GUGGCgUGc -5'
9350 3' -55.2 NC_002512.2 + 121385 0.67 0.946949
Target:  5'- aGGAGGGCgACggccggACGGa-GCCGCGCc -3'
miRNA:   3'- aCCUCUCGgUGa-----UGCUagUGGCGUGc -5'
9350 3' -55.2 NC_002512.2 + 138603 0.67 0.946525
Target:  5'- cGGGGAGaCGCUGgccaaggUGAuguUCACCGCGCc -3'
miRNA:   3'- aCCUCUCgGUGAU-------GCU---AGUGGCGUGc -5'
9350 3' -55.2 NC_002512.2 + 135224 0.67 0.945669
Target:  5'- cGGAGAGCgugccgacCGCgACGAUCACCaccgaggacaggacGUACGu -3'
miRNA:   3'- aCCUCUCG--------GUGaUGCUAGUGG--------------CGUGC- -5'
9350 3' -55.2 NC_002512.2 + 155961 0.67 0.939886
Target:  5'- aGGAGuucgugaagcagcacGGCCugUACG-UCcCCGCGCu -3'
miRNA:   3'- aCCUC---------------UCGGugAUGCuAGuGGCGUGc -5'
9350 3' -55.2 NC_002512.2 + 170366 0.67 0.93803
Target:  5'- gUGGccAGGGCCG-UGCGcggCGCCGCGCu -3'
miRNA:   3'- -ACC--UCUCGGUgAUGCua-GUGGCGUGc -5'
9350 3' -55.2 NC_002512.2 + 101498 0.67 0.936615
Target:  5'- cGGAcGAGUCGCUcuccccgucguagcACaGGgggCACCGCGCGa -3'
miRNA:   3'- aCCU-CUCGGUGA--------------UG-CUa--GUGGCGUGC- -5'
9350 3' -55.2 NC_002512.2 + 207396 0.68 0.919687
Target:  5'- aUGGAcGGCUGCUGCGcgCucauguccauggccuGCUGCACGg -3'
miRNA:   3'- -ACCUcUCGGUGAUGCuaG---------------UGGCGUGC- -5'
9350 3' -55.2 NC_002512.2 + 113267 0.68 0.917467
Target:  5'- aGGGGGGCgGCcgGCGGggcaGCCGCGgCGg -3'
miRNA:   3'- aCCUCUCGgUGa-UGCUag--UGGCGU-GC- -5'
9350 3' -55.2 NC_002512.2 + 123993 0.68 0.917467
Target:  5'- cGGAGAGCCAC-ACGGaccugagcgUguUCGCGCu -3'
miRNA:   3'- aCCUCUCGGUGaUGCU---------AguGGCGUGc -5'
9350 3' -55.2 NC_002512.2 + 142 0.68 0.917467
Target:  5'- cGGGGAGCCGg-GCGGggCGCCG-GCGg -3'
miRNA:   3'- aCCUCUCGGUgaUGCUa-GUGGCgUGC- -5'
9350 3' -55.2 NC_002512.2 + 229545 0.68 0.917467
Target:  5'- cGGGGAGCCGg-GCGGggCGCCG-GCGg -3'
miRNA:   3'- aCCUCUCGGUgaUGCUa-GUGGCgUGC- -5'
9350 3' -55.2 NC_002512.2 + 98129 0.68 0.916906
Target:  5'- cGGGGcgcuggucgucgcGGCCGCccgccccgGCGGUCGCCGCGg- -3'
miRNA:   3'- aCCUC-------------UCGGUGa-------UGCUAGUGGCGUgc -5'
9350 3' -55.2 NC_002512.2 + 108799 0.68 0.911756
Target:  5'- ---cGGGCCGCUGCGggCGCUGUuccGCGa -3'
miRNA:   3'- accuCUCGGUGAUGCuaGUGGCG---UGC- -5'
9350 3' -55.2 NC_002512.2 + 191911 0.69 0.90582
Target:  5'- aUGG-GAGCgCGCUAUGAUCgugACgGCGCu -3'
miRNA:   3'- -ACCuCUCG-GUGAUGCUAG---UGgCGUGc -5'
9350 3' -55.2 NC_002512.2 + 185321 0.69 0.89966
Target:  5'- aGGAGcuGCCcguCUGCG-UCGCCGCcCGg -3'
miRNA:   3'- aCCUCu-CGGu--GAUGCuAGUGGCGuGC- -5'
9350 3' -55.2 NC_002512.2 + 214824 0.69 0.89966
Target:  5'- -cGAGAGUCGCggugACGAUCAUgaUGCGCu -3'
miRNA:   3'- acCUCUCGGUGa---UGCUAGUG--GCGUGc -5'
9350 3' -55.2 NC_002512.2 + 149621 0.69 0.893278
Target:  5'- gGGAGAGUC-CgGgGAggACCGCACGg -3'
miRNA:   3'- aCCUCUCGGuGaUgCUagUGGCGUGC- -5'
9350 3' -55.2 NC_002512.2 + 112047 0.69 0.893278
Target:  5'- uUGGccAGCCGCgugcCGAUCAgCGCGCa -3'
miRNA:   3'- -ACCucUCGGUGau--GCUAGUgGCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.