miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9350 5' -59.3 NC_002512.2 + 196924 0.67 0.823029
Target:  5'- gGCCGagaGCAcgGCGGUCUUcACGUCCa -3'
miRNA:   3'- -CGGCa--CGUcgCGCCAGAGcUGCAGGa -5'
9350 5' -59.3 NC_002512.2 + 212833 0.67 0.814896
Target:  5'- cGCCGggGUugGGCGCGGg--CGcCGUCCg -3'
miRNA:   3'- -CGGCa-CG--UCGCGCCagaGCuGCAGGa -5'
9350 5' -59.3 NC_002512.2 + 92543 0.67 0.814896
Target:  5'- gGCCGcgGCGGcCGCGGcgaCGACGUCg- -3'
miRNA:   3'- -CGGCa-CGUC-GCGCCagaGCUGCAGga -5'
9350 5' -59.3 NC_002512.2 + 192788 0.67 0.814896
Target:  5'- cGUCGUGCGGCGCGGgcaCaACG-CCa -3'
miRNA:   3'- -CGGCACGUCGCGCCagaGcUGCaGGa -5'
9350 5' -59.3 NC_002512.2 + 107220 0.67 0.806615
Target:  5'- gGCCGgGgAGcCGCGGUCacCGuCGUCCg -3'
miRNA:   3'- -CGGCaCgUC-GCGCCAGa-GCuGCAGGa -5'
9350 5' -59.3 NC_002512.2 + 89641 0.67 0.805779
Target:  5'- aGCCGacgggGCGGacgaaGCGGUCgacguacUCGACGUgCCUc -3'
miRNA:   3'- -CGGCa----CGUCg----CGCCAG-------AGCUGCA-GGA- -5'
9350 5' -59.3 NC_002512.2 + 90644 0.68 0.789637
Target:  5'- cCCGgcgccGCGGcCGCGGUCUCGGaGUCg- -3'
miRNA:   3'- cGGCa----CGUC-GCGCCAGAGCUgCAGga -5'
9350 5' -59.3 NC_002512.2 + 146178 0.68 0.772153
Target:  5'- uGCCGcGCGGCaCGGUCgcccugggcUCGACGaCCg -3'
miRNA:   3'- -CGGCaCGUCGcGCCAG---------AGCUGCaGGa -5'
9350 5' -59.3 NC_002512.2 + 202125 0.68 0.754222
Target:  5'- aGCUG-GUGGCGcCGGUCUCGGcCG-CCg -3'
miRNA:   3'- -CGGCaCGUCGC-GCCAGAGCU-GCaGGa -5'
9350 5' -59.3 NC_002512.2 + 5894 0.68 0.754222
Target:  5'- cGCUcUGCucaauGCuGCGGUCUCGGCuUCCg -3'
miRNA:   3'- -CGGcACGu----CG-CGCCAGAGCUGcAGGa -5'
9350 5' -59.3 NC_002512.2 + 169554 0.69 0.726625
Target:  5'- cCCG-GCGGCGUGGccuucgccggcgUCUCcGCGUCCg -3'
miRNA:   3'- cGGCaCGUCGCGCC------------AGAGcUGCAGGa -5'
9350 5' -59.3 NC_002512.2 + 101437 0.69 0.70785
Target:  5'- gGCCG-GCGGCGCGG---CGACG-CCg -3'
miRNA:   3'- -CGGCaCGUCGCGCCagaGCUGCaGGa -5'
9350 5' -59.3 NC_002512.2 + 141782 0.69 0.70785
Target:  5'- aCCGUGauCAGCcccGCGGUgUCGGCGaUCCg -3'
miRNA:   3'- cGGCAC--GUCG---CGCCAgAGCUGC-AGGa -5'
9350 5' -59.3 NC_002512.2 + 102900 0.69 0.698373
Target:  5'- aCCGUGCgccuGGCGCGG--UCGACGgCCa -3'
miRNA:   3'- cGGCACG----UCGCGCCagAGCUGCaGGa -5'
9350 5' -59.3 NC_002512.2 + 89552 0.7 0.688846
Target:  5'- cUCGUGCAGCGCGGU---GAaguaGUCCUu -3'
miRNA:   3'- cGGCACGUCGCGCCAgagCUg---CAGGA- -5'
9350 5' -59.3 NC_002512.2 + 190208 0.7 0.679278
Target:  5'- gGUCG-GCGGCGCGGUCguccggGACGgCCa -3'
miRNA:   3'- -CGGCaCGUCGCGCCAGag----CUGCaGGa -5'
9350 5' -59.3 NC_002512.2 + 184545 0.7 0.669674
Target:  5'- aGCCG-GCGGCGCGGgC-CGGCGgacggCCc -3'
miRNA:   3'- -CGGCaCGUCGCGCCaGaGCUGCa----GGa -5'
9350 5' -59.3 NC_002512.2 + 189066 0.7 0.650393
Target:  5'- gGCCG-GCGGCgcucucgacgGCGaGUCUccgCGACGUCCg -3'
miRNA:   3'- -CGGCaCGUCG----------CGC-CAGA---GCUGCAGGa -5'
9350 5' -59.3 NC_002512.2 + 188649 0.7 0.640729
Target:  5'- cGCCGgcgGCGGCgGCGGcC-CGuCGUCCg -3'
miRNA:   3'- -CGGCa--CGUCG-CGCCaGaGCuGCAGGa -5'
9350 5' -59.3 NC_002512.2 + 181579 0.7 0.637829
Target:  5'- uCCGUcugcggcggcagggGCGGCG-GGUCcgCGACGUCCUc -3'
miRNA:   3'- cGGCA--------------CGUCGCgCCAGa-GCUGCAGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.