miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9351 3' -55.9 NC_002512.2 + 109929 0.66 0.972293
Target:  5'- aCCUgcUGGAGa--GCUCGGAgacggcgaUCGCGg -3'
miRNA:   3'- aGGAgcACCUCaagCGAGCCU--------AGCGC- -5'
9351 3' -55.9 NC_002512.2 + 120451 0.66 0.966595
Target:  5'- gUCCUCGcUGGuGUUgCGCaUCGuGuuUCGCGa -3'
miRNA:   3'- -AGGAGC-ACCuCAA-GCG-AGC-Cu-AGCGC- -5'
9351 3' -55.9 NC_002512.2 + 186196 0.66 0.95657
Target:  5'- gCCUCcUGGAGg--GCUCGGG-CGCc -3'
miRNA:   3'- aGGAGcACCUCaagCGAGCCUaGCGc -5'
9351 3' -55.9 NC_002512.2 + 204941 0.67 0.952816
Target:  5'- cCCUCcUGGAcGUUC-CUCGG-UCGCu -3'
miRNA:   3'- aGGAGcACCU-CAAGcGAGCCuAGCGc -5'
9351 3' -55.9 NC_002512.2 + 189595 0.67 0.946367
Target:  5'- gUCCUCG-GGAcgacGUUCGUgcgCGGcggccgcacgcgaucGUCGCGg -3'
miRNA:   3'- -AGGAGCaCCU----CAAGCGa--GCC---------------UAGCGC- -5'
9351 3' -55.9 NC_002512.2 + 178423 0.67 0.935652
Target:  5'- gUCUUCGUGcAGUUgGCggaUCGGGUCgGCGc -3'
miRNA:   3'- -AGGAGCACcUCAAgCG---AGCCUAG-CGC- -5'
9351 3' -55.9 NC_002512.2 + 205098 0.67 0.935652
Target:  5'- gUCCUCGgGGGGcgCGCcCGGAcccgaGCGg -3'
miRNA:   3'- -AGGAGCaCCUCaaGCGaGCCUag---CGC- -5'
9351 3' -55.9 NC_002512.2 + 198502 0.67 0.935652
Target:  5'- aUCUggUCGUacGGUcCGCUCGGGUCGCc -3'
miRNA:   3'- -AGG--AGCAccUCAaGCGAGCCUAGCGc -5'
9351 3' -55.9 NC_002512.2 + 169106 0.68 0.925752
Target:  5'- gUCCUCGcgGGGcGUUCGgUCcGGucGUCGCGc -3'
miRNA:   3'- -AGGAGCa-CCU-CAAGCgAG-CC--UAGCGC- -5'
9351 3' -55.9 NC_002512.2 + 204861 0.69 0.895254
Target:  5'- gUCCUCGUGGAGguccgCGaccgacggcgagcuCUCGGAcgGCGa -3'
miRNA:   3'- -AGGAGCACCUCaa---GC--------------GAGCCUagCGC- -5'
9351 3' -55.9 NC_002512.2 + 179104 0.69 0.870404
Target:  5'- gCCUCGUGG-GUccugaUCGCgUCG-AUCGCGu -3'
miRNA:   3'- aGGAGCACCuCA-----AGCG-AGCcUAGCGC- -5'
9351 3' -55.9 NC_002512.2 + 130518 0.7 0.855829
Target:  5'- -gCUgGcGGAGa--GCUCGGGUCGCGg -3'
miRNA:   3'- agGAgCaCCUCaagCGAGCCUAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.