miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9351 5' -63 NC_002512.2 + 190885 0.66 0.76172
Target:  5'- cCCCGCGUcgCGGGgcgaGGCGAacCGGaGGAa -3'
miRNA:   3'- -GGGCGCGagGCCCag--CUGCU--GCC-CCU- -5'
9351 5' -63 NC_002512.2 + 199976 0.66 0.76172
Target:  5'- uCCCGcCGCgUCCGcG-CGccCGGCGGGGAc -3'
miRNA:   3'- -GGGC-GCG-AGGCcCaGCu-GCUGCCCCU- -5'
9351 5' -63 NC_002512.2 + 136099 0.66 0.753041
Target:  5'- gCUCGCGCUggCGGcGgccaCaGCGACGGGGAg -3'
miRNA:   3'- -GGGCGCGAg-GCC-Ca---GcUGCUGCCCCU- -5'
9351 5' -63 NC_002512.2 + 211758 0.66 0.753041
Target:  5'- gCCCggGCGCUgCGGGagGACGugGaGGc- -3'
miRNA:   3'- -GGG--CGCGAgGCCCagCUGCugC-CCcu -5'
9351 5' -63 NC_002512.2 + 100073 0.66 0.753041
Target:  5'- gCCGCGggCCGGG--GACGGagcggucaGGGGAa -3'
miRNA:   3'- gGGCGCgaGGCCCagCUGCUg-------CCCCU- -5'
9351 5' -63 NC_002512.2 + 177182 0.66 0.753041
Target:  5'- cCCCGCGUcguUCgGGGaCGuCGucUGGGGAu -3'
miRNA:   3'- -GGGCGCG---AGgCCCaGCuGCu-GCCCCU- -5'
9351 5' -63 NC_002512.2 + 219455 0.66 0.753041
Target:  5'- cCCCGUGC-CCGacGG-CGACGACGcGGu- -3'
miRNA:   3'- -GGGCGCGaGGC--CCaGCUGCUGC-CCcu -5'
9351 5' -63 NC_002512.2 + 174093 0.66 0.752168
Target:  5'- aUgGCGCUCgauaGGGcUCggaacggGugGACGGGGAa -3'
miRNA:   3'- gGgCGCGAGg---CCC-AG-------CugCUGCCCCU- -5'
9351 5' -63 NC_002512.2 + 157160 0.66 0.744273
Target:  5'- gCgGCGggCCGGG-CGGCGugGGcGGc -3'
miRNA:   3'- gGgCGCgaGGCCCaGCUGCugCC-CCu -5'
9351 5' -63 NC_002512.2 + 117987 0.66 0.744273
Target:  5'- aCCCGCGCggCCGcucGUCGuccAUGcACGGGGu -3'
miRNA:   3'- -GGGCGCGa-GGCc--CAGC---UGC-UGCCCCu -5'
9351 5' -63 NC_002512.2 + 149040 0.66 0.744273
Target:  5'- cCCCGCGUcCCGaGGcUCGcCuACGGGGc -3'
miRNA:   3'- -GGGCGCGaGGC-CC-AGCuGcUGCCCCu -5'
9351 5' -63 NC_002512.2 + 162239 0.66 0.735425
Target:  5'- gCCCGCG-UCCGGGggccCGugGACGa--- -3'
miRNA:   3'- -GGGCGCgAGGCCCa---GCugCUGCcccu -5'
9351 5' -63 NC_002512.2 + 174260 0.66 0.735425
Target:  5'- gCCCGgG-UCCGGGUCccGGgGucuCGGGGGu -3'
miRNA:   3'- -GGGCgCgAGGCCCAG--CUgCu--GCCCCU- -5'
9351 5' -63 NC_002512.2 + 113202 0.66 0.735425
Target:  5'- cUCCGCGagcgggagCCGGGUCcuCGccCGGGGAg -3'
miRNA:   3'- -GGGCGCga------GGCCCAGcuGCu-GCCCCU- -5'
9351 5' -63 NC_002512.2 + 92654 0.66 0.734536
Target:  5'- aCCCGCGCggaUCCGGGaCGgccgcccGCGcCGGGc- -3'
miRNA:   3'- -GGGCGCG---AGGCCCaGC-------UGCuGCCCcu -5'
9351 5' -63 NC_002512.2 + 102046 0.67 0.73008
Target:  5'- uCCCGCuccggaCUCCGGaGcgguUCGAcacuuaauaauaggaCGACGGGGAc -3'
miRNA:   3'- -GGGCGc-----GAGGCC-C----AGCU---------------GCUGCCCCU- -5'
9351 5' -63 NC_002512.2 + 224797 0.67 0.726503
Target:  5'- gCCCGCGCcgacgCCGGcGaCGACGaccaacgccGCGGGcGGg -3'
miRNA:   3'- -GGGCGCGa----GGCC-CaGCUGC---------UGCCC-CU- -5'
9351 5' -63 NC_002512.2 + 152707 0.67 0.726503
Target:  5'- uCCC-CGgUCgGGGUgCGGCGGgcaGGGGAc -3'
miRNA:   3'- -GGGcGCgAGgCCCA-GCUGCUg--CCCCU- -5'
9351 5' -63 NC_002512.2 + 227677 0.67 0.725607
Target:  5'- gCgGCGCcgCCGGcgaccgagacgacGaCGGCGGCGGGGGc -3'
miRNA:   3'- gGgCGCGa-GGCC-------------CaGCUGCUGCCCCU- -5'
9351 5' -63 NC_002512.2 + 204691 0.67 0.725607
Target:  5'- cUCCGuCGCggCGGacgcgacGUCGGCGACGGcGGGc -3'
miRNA:   3'- -GGGC-GCGagGCC-------CAGCUGCUGCC-CCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.