miRNA display CGI


Results 21 - 32 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9352 5' -57.9 NC_002512.2 + 178222 0.69 0.779245
Target:  5'- gCGCCAcaGGuCCAGGGUCUccggggacGGCGCg- -3'
miRNA:   3'- aGCGGUucUC-GGUCCCAGA--------CUGCGac -5'
9352 5' -57.9 NC_002512.2 + 193532 0.66 0.882769
Target:  5'- cUCGUUcugacGGAGUCcgcGGGGUCgGGCGCUGu -3'
miRNA:   3'- -AGCGGu----UCUCGG---UCCCAGaCUGCGAC- -5'
9352 5' -57.9 NC_002512.2 + 193935 0.71 0.664041
Target:  5'- cCGCUGAcGGCCGGGGaacgucgUCUGGCGCg- -3'
miRNA:   3'- aGCGGUUcUCGGUCCC-------AGACUGCGac -5'
9352 5' -57.9 NC_002512.2 + 196371 0.74 0.503216
Target:  5'- cCGCCGgccgggcucacuucgGGAcGCCGcGGGUCUGGCGCg- -3'
miRNA:   3'- aGCGGU---------------UCU-CGGU-CCCAGACUGCGac -5'
9352 5' -57.9 NC_002512.2 + 198878 0.67 0.875902
Target:  5'- gUUGCCcAGGGCCAGGGagaacaUGAUGUc- -3'
miRNA:   3'- -AGCGGuUCUCGGUCCCag----ACUGCGac -5'
9352 5' -57.9 NC_002512.2 + 202925 0.66 0.882769
Target:  5'- gUCGUCAcGAacGUCAGGGUCUGGCu--- -3'
miRNA:   3'- -AGCGGUuCU--CGGUCCCAGACUGcgac -5'
9352 5' -57.9 NC_002512.2 + 204366 0.67 0.86156
Target:  5'- aCGCCAuGAGCaAGGG-CUGGCGg-- -3'
miRNA:   3'- aGCGGUuCUCGgUCCCaGACUGCgac -5'
9352 5' -57.9 NC_002512.2 + 207867 0.75 0.427663
Target:  5'- aCGCCAGcGAGuCCGGGGacggcuUCUGGCGCUc -3'
miRNA:   3'- aGCGGUU-CUC-GGUCCC------AGACUGCGAc -5'
9352 5' -57.9 NC_002512.2 + 215122 0.69 0.761056
Target:  5'- cCGCCAGaacGGCCGGGGUCc-GCGCg- -3'
miRNA:   3'- aGCGGUUc--UCGGUCCCAGacUGCGac -5'
9352 5' -57.9 NC_002512.2 + 225411 0.68 0.830599
Target:  5'- gCGCCGGG-GUCGGGGUCggguuggggccGACGCc- -3'
miRNA:   3'- aGCGGUUCuCGGUCCCAGa----------CUGCGac -5'
9352 5' -57.9 NC_002512.2 + 227988 0.71 0.623484
Target:  5'- gCGCCGAGGGCCgAGGGcCggagccggacggGACGCg- -3'
miRNA:   3'- aGCGGUUCUCGG-UCCCaGa-----------CUGCGac -5'
9352 5' -57.9 NC_002512.2 + 229541 0.67 0.854096
Target:  5'- aCGCCgGGGAGCCGGGcGg--GGCGCc- -3'
miRNA:   3'- aGCGG-UUCUCGGUCC-CagaCUGCGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.