miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9352 5' -57.9 NC_002512.2 + 207867 0.75 0.427663
Target:  5'- aCGCCAGcGAGuCCGGGGacggcuUCUGGCGCUc -3'
miRNA:   3'- aGCGGUU-CUC-GGUCCC------AGACUGCGAc -5'
9352 5' -57.9 NC_002512.2 + 110698 0.74 0.453014
Target:  5'- cCGCCGcAGGGCCAGGGcCagcugcaUGGCGUUGg -3'
miRNA:   3'- aGCGGU-UCUCGGUCCCaG-------ACUGCGAC- -5'
9352 5' -57.9 NC_002512.2 + 196371 0.74 0.503216
Target:  5'- cCGCCGgccgggcucacuucgGGAcGCCGcGGGUCUGGCGCg- -3'
miRNA:   3'- aGCGGU---------------UCU-CGGU-CCCAGACUGCGac -5'
9352 5' -57.9 NC_002512.2 + 90371 0.73 0.556659
Target:  5'- uUCGC----GGCCAGGGUCUGcACGCUc -3'
miRNA:   3'- -AGCGguucUCGGUCCCAGAC-UGCGAc -5'
9352 5' -57.9 NC_002512.2 + 135029 0.72 0.585974
Target:  5'- aCGCCAGGA-UCGGGGgcccgUCUGACGCg- -3'
miRNA:   3'- aGCGGUUCUcGGUCCC-----AGACUGCGac -5'
9352 5' -57.9 NC_002512.2 + 174790 0.72 0.615568
Target:  5'- cUCGuCCAGGAGCaGGGGuuggaccuUCUGGCGCa- -3'
miRNA:   3'- -AGC-GGUUCUCGgUCCC--------AGACUGCGac -5'
9352 5' -57.9 NC_002512.2 + 227988 0.71 0.623484
Target:  5'- gCGCCGAGGGCCgAGGGcCggagccggacggGACGCg- -3'
miRNA:   3'- aGCGGUUCUCGG-UCCCaGa-----------CUGCGac -5'
9352 5' -57.9 NC_002512.2 + 106999 0.71 0.623484
Target:  5'- aCGCCc-GGGCCGGGGUCggccgagagccgGGCGCg- -3'
miRNA:   3'- aGCGGuuCUCGGUCCCAGa-----------CUGCGac -5'
9352 5' -57.9 NC_002512.2 + 193935 0.71 0.664041
Target:  5'- cCGCUGAcGGCCGGGGaacgucgUCUGGCGCg- -3'
miRNA:   3'- aGCGGUUcUCGGUCCC-------AGACUGCGac -5'
9352 5' -57.9 NC_002512.2 + 175594 0.69 0.736781
Target:  5'- gUCGCCGugcGGGuccuucgggugggguGCCAGGGUCgccGACGCc- -3'
miRNA:   3'- -AGCGGU---UCU---------------CGGUCCCAGa--CUGCGac -5'
9352 5' -57.9 NC_002512.2 + 113065 0.69 0.742439
Target:  5'- cCGCaCGAGGGCCAGgcGGUCgacGAUGCg- -3'
miRNA:   3'- aGCG-GUUCUCGGUC--CCAGa--CUGCGac -5'
9352 5' -57.9 NC_002512.2 + 215122 0.69 0.761056
Target:  5'- cCGCCAGaacGGCCGGGGUCc-GCGCg- -3'
miRNA:   3'- aGCGGUUc--UCGGUCCCAGacUGCGac -5'
9352 5' -57.9 NC_002512.2 + 96530 0.69 0.761056
Target:  5'- gCGCCGgcggugugagccGGGGCCGGGGaUCccgGACGCc- -3'
miRNA:   3'- aGCGGU------------UCUCGGUCCC-AGa--CUGCGac -5'
9352 5' -57.9 NC_002512.2 + 178222 0.69 0.779245
Target:  5'- gCGCCAcaGGuCCAGGGUCUccggggacGGCGCg- -3'
miRNA:   3'- aGCGGUucUC-GGUCCCAGA--------CUGCGac -5'
9352 5' -57.9 NC_002512.2 + 100547 0.68 0.805584
Target:  5'- cUGCCcAGGGCgCAGaGGUCcgUGACGCa- -3'
miRNA:   3'- aGCGGuUCUCG-GUC-CCAG--ACUGCGac -5'
9352 5' -57.9 NC_002512.2 + 168051 0.68 0.814079
Target:  5'- cUCGCuCGGGAGUCGGGGUUgggGAUGa-- -3'
miRNA:   3'- -AGCG-GUUCUCGGUCCCAGa--CUGCgac -5'
9352 5' -57.9 NC_002512.2 + 101453 0.68 0.830599
Target:  5'- aCGCCGAGAGCgGGGGg--GugGaCa- -3'
miRNA:   3'- aGCGGUUCUCGgUCCCagaCugC-Gac -5'
9352 5' -57.9 NC_002512.2 + 225411 0.68 0.830599
Target:  5'- gCGCCGGG-GUCGGGGUCggguuggggccGACGCc- -3'
miRNA:   3'- aGCGGUUCuCGGUCCCAGa----------CUGCGac -5'
9352 5' -57.9 NC_002512.2 + 138 0.67 0.854096
Target:  5'- aCGCCgGGGAGCCGGGcGg--GGCGCc- -3'
miRNA:   3'- aGCGG-UUCUCGGUCC-CagaCUGCGac -5'
9352 5' -57.9 NC_002512.2 + 229541 0.67 0.854096
Target:  5'- aCGCCgGGGAGCCGGGcGg--GGCGCc- -3'
miRNA:   3'- aGCGG-UUCUCGGUCC-CagaCUGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.